Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04715 ATGGAAAACATAGGCACCTCAGAACTTTCACACCAATCTCAAAACCAAAACAAGAATCTTCCCATGATGCCCTATGAGAAGAGAGTGATGAAGATTCCAAAAGTAGGAAAAAAGATTGAGAAAAAGTTTCTTGGGGTTAGACAAAGACCTTCAGGAAGATGGATTGCTGAGATCAAGGATTCCTCACAGAAACTAAGGCTTTGGTTAGGAACTTTTGACAAAGCAGAAGAAGCTGCCATGGCTTATGACTGTGCTGCAAGGCTTCTTAGAGGGAGAAATGCCAAAACAAATTTTCCAAACCCTGGAATCATGAACACTCATGAACAAGATTATTACAGCATTTTGGGCAAGAATCCAAGGTCTTACCAACTTCTTAAACATGCAGTTATGAAGAACCATGCACTTTCAGCATCTCTTTATTCCACATTCATGCCCTGGAAAAACCAGATCATGATGAGAGATGAACATGACATCCTTGTTGAAGAAACTGTAGTTTGTTCCATTCCCGAACAAGGCTCTGCCTGCTGTGGAATTTCGTATGGAAGTTCTAAGGTTTATTCTTCTGTTGTTGTAGCTCCTTCTTTCGGTGTTTCTTCTCATGATGTAACCCCCTAA 615 0.4033 MENIGTSELSHQSQNQNKNLPMMPYEKRVMKIPKVGKKIEKKFLGVRQRPSGRWIAEIKDSSQKLRLWLGTFDKAEEAAMAYDCAARLLRGRNAKTNFPNPGIMNTHEQDYYSILGKNPRSYQLLKHAVMKNHALSASLYSTFMPWKNQIMMRDEHDILVEETVVCSIPEQGSACCGISYGSSKVYSSVVVAPSFGVSSHDVTP 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04715 204 MobiDBLite consensus disorder prediction 1 21 - -
Viun3g04715 204 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
Viun3g04715 204 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Viun3g04715 204 Pfam AP2 domain 42 91 IPR001471 GO:0003700|GO:0006355
Viun3g04715 204 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 13 123 - -
Viun3g04715 204 FunFam ethylene-responsive transcription factor RAP2-11 41 100 - -
Viun3g04715 204 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
Viun3g04715 204 Gene3D AP2/ERF domain 41 100 IPR036955 GO:0003700|GO:0006355
Viun3g04715 204 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
Viun3g04715 204 CDD AP2 41 100 IPR001471 GO:0003700|GO:0006355
Viun3g04715 204 SUPERFAMILY DNA-binding domain 42 99 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04715 Viun-Chr3 54523414 54524283 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04715 31 100 AP2-EREBP Transcription Factor Family AT5G19790 64.286 3.62e-26 99.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun3g04715 AP2 1.8e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04715 - K09286 var:108340966 350.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04715 3 54523414 54524283 Viun3g04715 3 54523414 54524283 ECH