Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04709 ATGGAAACTTTGATGGGTCTTAAAGCAGGGAAGCCTGTTCAAGTTCCAGTATATGATTTCAAGTCTAGTTCTCGCATAGGATACAGGACTATTGAAGTCCCAAGCTCTCGTATTGTAATCATAGAAGGCATCTATGCCTTAAGTGAAAAATTAAGGCCTTTGCTTGATCTTCGTGTTTCTGTCACGGGTGGAGTTCATTTTGACCTTGTTAAGCGTGTATTACGGGACATCCACCGTGCTGGTCAAGAGCCTGAAGAAATAATTCACCAAATCTCTGAAACGGTATATCCTATGTATAAAGCTTATATTGAGCCAGATCTCCAAACAGCACATCTAAAAATCATTAACAAATTTAATCCATTCTCTGGATTTCAAAATCCCACATACATATTGAAGTCAGCAAGAACTGTGACAGTTGATCAAATCAAGGAAATTATTGCTGCACAGCATACTGAAACCAAAGAGGAGACGTATGATATATTTCTTCTACCGCCTGGGGAAGACCCTGAAGCTTGTCAATCATATTTGAGAATGAGAAACCGTGATGGAAAGTACAATCTCATGTTTGAGGAATGGGTGACAGATAGTCCATTCATAATATCTCCTAGAATTACTTTTGAGGTCAGTGTGCGCCTTCTTGGAGGGTTGATGGCCTTAGGGTACACAATTGCATCTATACTGAAAAGAAGCAGCCATATCTTTCGTGATGATAAAGTGACCATAAAAACTGATTGGTTAGAACAACTGAATCGCACATATGTTCAGGTGCAAGGGAAAGACAGGATCTATTGCAAGTTTGTAGCAGAGAAACTGGGATTGGATGGTTCCTATGTTCCTCGCACTTATATTGAACAAATTCAGCTAGAAAAGCTTGTGAACGATGTGATGGCATTGCCAGACGATCTTAAGTCAAAACTCAGCATAGATGATGACGTAGTTTCAAGCCCCAAAGAAGCCCTTTCCAGAGCTTCTGCAGATAGAAGGATGAAGTATCTTAATCGTGGTATTTCACACTCATATTCGACTCAAAGGGACAAGATTCTACCTAAGCTGACTAAACTTGCTATAAATAACAGAAGATTCGATGGAAGAACTCTTGAATCTCCTGCATCGATTGCTAACAATGGGGTCATCACTCAACTTTCTGATCAAATTTCCACATTAAATGAAAGAATGGATGAATTCACCTCCCGTATTGAAGAATTGAATTCAAAGTTTGCTAGCAAAAAAGTTTCGGCCAGTCAACAAAACTTGGCTTCACAGGCTGAGGCCAGTAATGGCTCAGGCCCCACTTCCTTGTTTGTAACTGGATTAGGTAATGGTTCATTGACTGGATCATTGCTGCCTAATTCTTCATCTTCTTCTCAATTGGCGAAAGAGTCTCCCCTGATGGACGAGGTGTTAGTTATTGCACGAGGACAACGTCAAATCTTGCATCAACTAGACACTCTGAGCAATCTTTTGCATGAATACTTAGGAGAACGGTCACGCCTTGGAAGACCAAATCAGACAGGTAGAATGCGTGAACCTGAATCTGTTGCCATCCCTATGGTTCTGACTCTGGTAGTTGGTGTTGTTGGTGTGTTTTTGTTGAAGGGTGTGACATCCCAAAAGTAG 1617 0.4082 METLMGLKAGKPVQVPVYDFKSSSRIGYRTIEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIHRAGQEPEEIIHQISETVYPMYKAYIEPDLQTAHLKIINKFNPFSGFQNPTYILKSARTVTVDQIKEIIAAQHTETKEETYDIFLLPPGEDPEACQSYLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVSVRLLGGLMALGYTIASILKRSSHIFRDDKVTIKTDWLEQLNRTYVQVQGKDRIYCKFVAEKLGLDGSYVPRTYIEQIQLEKLVNDVMALPDDLKSKLSIDDDVVSSPKEALSRASADRRMKYLNRGISHSYSTQRDKILPKLTKLAINNRRFDGRTLESPASIANNGVITQLSDQISTLNERMDEFTSRIEELNSKFASKKVSASQQNLASQAEASNGSGPTSLFVTGLGNGSLTGSLLPNSSSSSQLAKESPLMDEVLVIARGQRQILHQLDTLSNLLHEYLGERSRLGRPNQTGRMREPESVAIPMVLTLVVGVVGVFLLKGVTSQK 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04709 538 Coils Coil 378 405 - -
Viun3g04709 538 Gene3D - 131 291 - -
Viun3g04709 538 PANTHER URIDINE KINASE 1 301 - -
Viun3g04709 538 Gene3D - 1 123 IPR027417 -
Viun3g04709 538 Pfam Phosphoribulokinase / Uridine kinase family 2 114 IPR006083 GO:0005524|GO:0016301
Viun3g04709 538 Pfam CYTH domain 149 282 IPR023577 -
Viun3g04709 538 SUPERFAMILY CYTH-like phosphatases 137 285 IPR033469 -
Viun3g04709 538 ProSiteProfiles CYTH domain profile. 126 288 IPR023577 -
Viun3g04709 538 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 114 IPR027417 -
Viun3g04709 538 CDD UMPK_like 2 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04709 Viun-Chr3 54459262 54469870 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04709 7 200 PRT Gene Family AT5G40870 26.154 4.37e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04709 K00876 - gmx:100803122 931.784
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04709 3 54459262 54469870 Viun3g04709 3 54459262 54469870 ECH