Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04708 ATGGCACAAGATACTGTTTTTGGTGCTGACTCACCTCGACGACGTCTATTGCGAGATCAGGTTCAAGTGGTTAAAAGAAAGGATTCTGATCGCTATGAAATTGTTCCTATCCAAGATTCACTGTCATTTGAGAAAGGATTTTTCATATTCATTCGTGCGTGCCAATTACTGGCTCAAAAGAACGATGGAATCATATTAGTAGGAGTTGCAGGTCCATCTGGAGCAGGGAAAACTGTTTTCACTGAGAAGATCCTCAATTTTATGCCAAGCATAGCTGTCATAACAATGGACAATTATAACGATTCTAGTAGAATTATTGATGGAAACTTTGATGACCCTCGGTTGACGGATTATGATACCTTGCTTGAAAATATACAGGGTCTTAAAGCAGGGAAGCCTGTTCAAGTTCCAGTATATGATTTCAAGTCTAGTTCTCGCATAGGATACAGGACTATTGAAGTCCCAAGCTCTCGTATTGTAATCATAGAAGGCATCTATGCCTTAAGTGAAAAATTAAGGCCTTTGCTTGATCTTCGTGTTTCTGTCACGGGTGGAGTTCATTTTGACCTTGTTAAGCGTGTATTACGGGACATCCACCGTGCTGGTCAAGAGCCTGAAGAAATAATTCACCAAATCTCTGAAACGGTATATCCTATGTATAAAGCTTATATTGAGCCAGATCTCCAAACAGCACATCTAAAAATCATTAACAAATTTAATCCATTCTCTGGATTTCAAAATCCCACATACATATTGAAGTCAGCAAGAACTGTGACAGTTGATCAAATCAAGGAAATTATTGCTGCACAGCATACTGAAACCAAAGAGGAGACGTATGATATATTTCTTCTACCGCCTGGGGAAGACCCTGAAGCTTGTCAATCATATTTGAGAATGAGAAACCGTGATGGAAAGTACAATCTCATGTTTGAGGAATGGGTGACAGATAGTCCATTCATAATATCTCCTAGAATTACTTTTGAGGTCAGTGTGCGCCTTCTTGGAGGGTTGATGGCCTTAGGGTACACAATTGCATCTATACTGAAAAGAAGCAGCCATATCTTTCGTGATGATAAAGTGACCATAAAAACTGATTGGTTAGAACAACTGAATCGCACATATGTTCAGGTGCAAGGGAAAGACAGGATCTATTGCAAGTTTGTAGCAGAGAAACTGGGATTGGATGGTTCCTATGTTCCTCGCACTTATATTGAACAAATTCAGCTAGAAAAGCTTGTGAACGATGTGATGGCATTGCCAGACGATCTTAAGTCAAAACTCAGCATAGATGATGACGTAGTTTCAAGCCCCAAAGAAGCCCTTTCCAGAGCTTCTGCAGATAGAAGGATGAAGTATCTTAATCGTGGTATTTCACACTCATATTCGACTCAAAGGGACAAGATTCTACCTAAGCTGACTAAACTTGCTATAAATAACAGAAGATTCGATGGAAGAACTCTTGAATCTCCTGCATCGATTGCTAACAATGGGGTCATCACTCAACTTTCTGATCAAATTTCCACATTAAATGAAAGAATGGATGAATTCACCTCCCGTATTGAAGAATTGAATTCAAAGTTTGCTAGCAAAAAAGTTTCGGCCAGTCAACAAAACTTGGCTTCACAGGCTGAGGCCAGTAATGGCTCAGGCCCCACTTCCTTGTTTGTAACTGGATTAGGTAATGGTTCATTGACTGGATCATTGCTGCCTAATTCTTCATCTTCTTCTCAATTGGCGAAAGAGTCTCCCCTGATGGACGAGGTGTTAGTTATTGCACGAGGACAACGTCAAATCTTGCATCAACTAGACACTCTGAGCAATCTTTTGCATGAATACTTAGGAGAACGGTCACGCCTTGGAAGACCAAATCAGACAGGTAGAATGCGTGAACCTGAATCTGTTGCCATCCCTATGGTTCTGACTCTGGTAGTTGGTGTTGTTGGTGTGTTTTTGTTGAAGGGTGTGACATCCCAAAAGTAG 1980 0.4056 MAQDTVFGADSPRRRLLRDQVQVVKRKDSDRYEIVPIQDSLSFEKGFFIFIRACQLLAQKNDGIILVGVAGPSGAGKTVFTEKILNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIQGLKAGKPVQVPVYDFKSSSRIGYRTIEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIHRAGQEPEEIIHQISETVYPMYKAYIEPDLQTAHLKIINKFNPFSGFQNPTYILKSARTVTVDQIKEIIAAQHTETKEETYDIFLLPPGEDPEACQSYLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVSVRLLGGLMALGYTIASILKRSSHIFRDDKVTIKTDWLEQLNRTYVQVQGKDRIYCKFVAEKLGLDGSYVPRTYIEQIQLEKLVNDVMALPDDLKSKLSIDDDVVSSPKEALSRASADRRMKYLNRGISHSYSTQRDKILPKLTKLAINNRRFDGRTLESPASIANNGVITQLSDQISTLNERMDEFTSRIEELNSKFASKKVSASQQNLASQAEASNGSGPTSLFVTGLGNGSLTGSLLPNSSSSSQLAKESPLMDEVLVIARGQRQILHQLDTLSNLLHEYLGERSRLGRPNQTGRMREPESVAIPMVLTLVVGVVGVFLLKGVTSQK 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04708 659 CDD UMPK_like 66 238 - -
Viun3g04708 659 PANTHER URIDINE KINASE 17 422 - -
Viun3g04708 659 Gene3D - 65 249 IPR027417 -
Viun3g04708 659 PRINTS Uridine kinase signature 64 81 - -
Viun3g04708 659 PRINTS Uridine kinase signature 223 236 - -
Viun3g04708 659 PRINTS Uridine kinase signature 187 197 - -
Viun3g04708 659 PRINTS Uridine kinase signature 131 146 - -
Viun3g04708 659 SUPERFAMILY CYTH-like phosphatases 258 406 IPR033469 -
Viun3g04708 659 Pfam Phosphoribulokinase / Uridine kinase family 67 235 IPR006083 GO:0005524|GO:0016301
Viun3g04708 659 ProSiteProfiles CYTH domain profile. 247 409 IPR023577 -
Viun3g04708 659 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 29 235 IPR027417 -
Viun3g04708 659 Coils Coil 499 526 - -
Viun3g04708 659 Pfam CYTH domain 270 403 IPR023577 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04708 Viun-Chr3 54459262 54472515 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04708 65 321 PRT Gene Family AT5G40870 25.188 8.26e-18 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04708 K00876 - gmx:100803122 1161.75