Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04706 ATGGGGTGCTCATTCTCCGGTTTGAACGCGCTGTACGACTCCGTTAACAGCGGAGGCGATGCGTGGATCAACGAGAATCGTTTCCGCATCGTGCGCCAGCTCGGAGAAGGTGGCTTCGCCTACGTCTACCTCGTCAAGGAGCTTATCAATGACTCCGCCGCCGGTGGCCTTGCCAAGAAGCTCAAAGACTCCTCTCATATCTCTGATGATGGGACTTATGCTATGAAAAAGGTCCTCATTCAGAACAATGAACAGCTGGAGTTGGTCAGGGAGGAGATCCGTGTTTCGTCACTGTTCAATCATCCCAATCTGCTCCCACTTCTTGATCATGCAATCATTTCTGTTAAGCCTACCCAAGAAACGTCTTGGAACCATGAAGCATACTTGCTGTTTCCAGTTCATATGGATGGAACATTGCTAGACAATGCCAAAGTAATGAAATCCAACAAGGAATTCTATTCCACCTCAGATGTTCTTCAAATATTTCGTCAGCTTTGTGCAGGACTCAAGCACATGCACAGCTTTGATCCTCCTTATGCACATAATGATGTCAAACCTGGTAATGTTCTCTTAACACACAGAAAAGGACAGCCACCTCTTGCCATACTGATGGATTTTGGCAGTGCTCGTCCTGCAAGGAAGCAAATTACCAACAGATCAGAGGCACTCCAGTTACAGGAATGGGCAGCTGAACACTGCTCTGCACCTTTCCGAGCTCCTGAGCTGTGGGATTGTCCAAGCCAAGCTACTATAGATGAGAGGACTGACATTTGGTCACTAGGATGCACATTATATGCAATAATGTATGGGGTATCTCCATTTGAATATGCACTGGGAGAGTCTGGTGGAAGCCTGCAATTGGCTATCGTAAATGCTCAGGTGAAATGGCCAGCTGGACCTAAGCCTCCATATCCAGAAGCTTTTCACCAGTTCGTGTCATGGATGCTTCAGCCCCAGGCTGCTATGAGGCCCCGAATAGATGATATCGTCATCCATGTGGATAAGTTGATTGCAAAGTTCTCCCAATGA 1029 0.4742 MGCSFSGLNALYDSVNSGGDAWINENRFRIVRQLGEGGFAYVYLVKELINDSAAGGLAKKLKDSSHISDDGTYAMKKVLIQNNEQLELVREEIRVSSLFNHPNLLPLLDHAIISVKPTQETSWNHEAYLLFPVHMDGTLLDNAKVMKSNKEFYSTSDVLQIFRQLCAGLKHMHSFDPPYAHNDVKPGNVLLTHRKGQPPLAILMDFGSARPARKQITNRSEALQLQEWAAEHCSAPFRAPELWDCPSQATIDERTDIWSLGCTLYAIMYGVSPFEYALGESGGSLQLAIVNAQVKWPAGPKPPYPEAFHQFVSWMLQPQAAMRPRIDDIVIHVDKLIAKFSQ 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04706 342 PANTHER SERINE/THREONINE-PROTEIN KINASE 16 3 340 - -
Viun3g04706 342 Gene3D Transferase(Phosphotransferase) domain 1 15 341 - -
Viun3g04706 342 ProSiteProfiles Protein kinase domain profile. 28 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g04706 342 CDD STKc_16 27 338 - -
Viun3g04706 342 ProSitePatterns Protein kinases ATP-binding region signature. 34 60 IPR017441 GO:0005524
Viun3g04706 342 SMART serkin_6 28 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g04706 342 Pfam Protein kinase domain 66 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g04706 342 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Viun3g04706 342 SUPERFAMILY Protein kinase-like (PK-like) 18 332 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04706 Viun-Chr3 54431939 54438897 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04706 33 332 EF-hand Containing Proteins AT4G04710 24.837 4.49e-15 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NAK Viun3g04706 Pkinase 3.8e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04706 K08856 - gmx:100803659 664.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04706 3 54431939 54438897 Viun3g04706 3 54431939 54438897 ECH