Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04698 ATGGGGTCGTCGTCGGCGTCGTTGAGTTCTCCAAAGAAGAGAGCGAAATCCCAAGTAGAGGAGGATGAGGACGACGAAGAGGGCGTTTGTTGCGGGATTTGCTACGCGGAGCGAGGGGTTTCGATTGCCGGGGAAATCGATTCCTGCAGCCACTACTTTTGCTTCGTATGCATCATGGAATGGGCTAAGCATGAGTCTCGATGCCCAATTTGTCGCCAGAGATTCTCCAACGTTCGCAGGCTCCCCATGCATGGCGTCTTTTCTTCCTCCCGGGACGTGAAGGTCCCTCATCGTGACCAGGCTTATCATCCTCATGGGAATGTGTCAATTGGTCCTGCCGATTCTTATGCTGAAACCAAATGTGGTGTTTGTCGTGCTGGGACAGATGAACATCTTCTACTACTTTGTGATCTTTGTGATACTGCTTCACACACATACTGTGTTGGCCTGGGATATACTGTTCCTGAAGGGGATTGGTTTTGTCACGATTGTGCTATTTCACGGGAGACCAATGCCAATGAAGATCCAGACCAACAACGTGTTGTGCCAGAGGCTGAGCCAAGAGAAGTCGTTGATATCTTTGATATTGTGCGTGAAACAGGCAGTCGGTTGGTTAAAAGACCAAGGACATCTCCTTTACAACAGAACCTGTCATCTCCTTCTGCTATTCCTTTATCAGATAGGTTAAGTAGATTTAAAGGAAAAAGTCCTGCCAAAGGTGTCAATAGTATGCAGCGTAATATACAGGCATTTCGTGAAAACTGGAATGCTTTGAGGAGTGGTTCATTACGGTTCCATTGTGATGCAGATCAACCTAGCAGTTCAGTTAGTCAAAAGCAAGATTCTAGATCCTTATCACATGGAAAACTATATGATTCACATTCTGGGGCTTCCACAAGCGTGCAGCAATCCACCGTCCAAGGTGGTCCTTCTAGCAAAACGTTGAATGAGAGAGTCATTAAAGATGATGTTGACAAGGCTTGGAAAATGGTGGACAGAGCAAAGAGGGTGCAACTAACTCATCAAAGAATTAGCAGCAATCGGCAGGGAGTAGATAGACCCTCATGCAGTAGAGGAGCTCGTAAAACATCAGTTGAACACTCTAATTTCCCAGAACTGAAAGATCAACATTCGAAAGAATTGGACTTAAGGAACACTAAGAAAGAGAAGCAGTGTGACCATTCTAGACTCTTCCAGAATATCAAAAATTGCTCAACTTTAAAGTTGGAAGACAAAAAGAAAAGTAGAGTTAGATGTGAGGAGATGATACACCGTGTAAGGGACCATACTACTCATTCAGAAGGATACTGTGAAAGTCCATTGTCTAGAAAGGTCCCTACTAATATCCAGGGTGGTACTCCCTGTCGTGAAGAAAAGAGAAATGCTTGCCAGGTAACTTCGGCAGATTTAGCTTCCTCGCGTGGCAAGTTTGTTAGTGACCTCTCCTCTTGTAAGGACTTGGATCTTGCCAATGAAGAAAAGAGATTAGCTAGTAGTCGCGAGGATGGAAGCACAGGAAAAACTAGCGATGCAAAAACTGAGATCCAGTCTCTTGTCAAATTGAATCTGAAGCTCTTAACCAGAGATAAAAAATTAGGTTTTGATACCTTCAAGGTAGTTGCTAGGCAGGCCACCCATACCATCTTGGCTGCTTGCAGTTCTGAGCAGCAAAAGTGCAGCACATCCTCCTCTTGCTCAGTATGCTGTCATTCTGACAATACTCCTCAGTTTCAGAAATCTACTTTAATGCCTAATTGTTGCAGGCAATGCTTTTACGCCTTTGTAAACAACGTTGTCAGTTCCACCATTATGGAGAAAGTGGGTTGTGCTTGA 1833 0.4463 MGSSSASLSSPKKRAKSQVEEDEDDEEGVCCGICYAERGVSIAGEIDSCSHYFCFVCIMEWAKHESRCPICRQRFSNVRRLPMHGVFSSSRDVKVPHRDQAYHPHGNVSIGPADSYAETKCGVCRAGTDEHLLLLCDLCDTASHTYCVGLGYTVPEGDWFCHDCAISRETNANEDPDQQRVVPEAEPREVVDIFDIVRETGSRLVKRPRTSPLQQNLSSPSAIPLSDRLSRFKGKSPAKGVNSMQRNIQAFRENWNALRSGSLRFHCDADQPSSSVSQKQDSRSLSHGKLYDSHSGASTSVQQSTVQGGPSSKTLNERVIKDDVDKAWKMVDRAKRVQLTHQRISSNRQGVDRPSCSRGARKTSVEHSNFPELKDQHSKELDLRNTKKEKQCDHSRLFQNIKNCSTLKLEDKKKSRVRCEEMIHRVRDHTTHSEGYCESPLSRKVPTNIQGGTPCREEKRNACQVTSADLASSRGKFVSDLSSCKDLDLANEEKRLASSREDGSTGKTSDAKTEIQSLVKLNLKLLTRDKKLGFDTFKVVARQATHTILAACSSEQQKCSTSSSCSVCCHSDNTPQFQKSTLMPNCCRQCFYAFVNNVVSSTIMEKVGCA 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04698 610 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 185 IPR013083 -
Viun3g04698 610 SUPERFAMILY RING/U-box 20 79 - -
Viun3g04698 610 SUPERFAMILY FYVE/PHD zinc finger 114 166 IPR011011 -
Viun3g04698 610 MobiDBLite consensus disorder prediction 344 383 - -
Viun3g04698 610 ProSiteProfiles Zinc finger RING-type profile. 31 72 IPR001841 -
Viun3g04698 610 Pfam Ring finger domain 31 72 IPR001841 -
Viun3g04698 610 Pfam PHD-finger 121 165 IPR019787 -
Viun3g04698 610 PANTHER F18C1.6 PROTEIN 11 607 - -
Viun3g04698 610 MobiDBLite consensus disorder prediction 207 242 - -
Viun3g04698 610 ProSiteProfiles Zinc finger PHD-type profile. 118 167 IPR019787 -
Viun3g04698 610 MobiDBLite consensus disorder prediction 1 21 - -
Viun3g04698 610 MobiDBLite consensus disorder prediction 207 225 - -
Viun3g04698 610 SMART PHD_3 120 165 IPR001965 -
Viun3g04698 610 SMART ring_2 31 71 IPR001841 -
Viun3g04698 610 MobiDBLite consensus disorder prediction 269 313 - -
Viun3g04698 610 ProSitePatterns Zinc finger RING-type signature. 49 58 IPR017907 -
Viun3g04698 610 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 105 IPR013083 -
Viun3g04698 610 MobiDBLite consensus disorder prediction 365 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04698 Viun-Chr3 54361013 54367021 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04698 112 168 C2H2 Transcription Factor Family AT3G01460 37.931 7.17e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Viun3g04698 PHD 1.2e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04698 - - gmx:100808541 889.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04698 3 54361013 54367021 Viun3g04698 3 54361013 54367021 ECH