Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04696 ATGACTGCCAACGGAGGGAGTTGTCTGAAGACTCATGATTTCCTGCAGCCACTAGAGCGGCTAGAGACGAAGGGGAGTGCGAAGGAAGAAGCCACAGATGAAATATCATGGGTGGTTGAGAAAGCAGGACCTTCAGTTGAGCACCTCTTACCTGGAGGAATTGGGACTTACAGCATTAACCACATTTCATATGTTAATAATAACAATAACAATAATAATCAAAGGCTTCCGAAGGCGGAGACGTCTCTTTTTGTGCGTCAAACAACTAGTACGGACAGGAACGATGAGAACTCCAACTGCAGTTCGTATACTACTTCGAGCGGTTTCACTTTGTGGGAAGACTCATCGGGGAAGAGGGGCAAAACAGGAAAGGAGAATAATTCGGGCGACAGACCCTCTACTGGAGAGTGTGCGGCGACAAAGCTAGGGCAGTGGACATCAACGGAGCGGACCTCACAGTCGTTTTGTACCAATCGTCACGATAGCTTCAGCTCTCGCTCTTCATCTCAGACAACTGGGCAGAAGAACCAGAGTTTTATGGAAATGATGAAGTCCGCAAGGGATAGTGCCCAGGATGAAGTGCTGGAGAACGAAGAAACATTTTTTCTCAAGAAAGAACCTTCCAATAACCAAAGAGAGCTGAGGGTAAAAGTGGATGGTAAGAGTACCGATCAGAAGCCAAACACACCAAGATCAAAACACTCTGCAACAGAACAACGGAGAAGGAGCAAAATTAATGACAGATTCCAAATGCTAAGAGAGCTTATTCCACACAGTGACCAAAAGAGGGACAAAGCATCTTTTTTATTAGAGGTCATTGAGTATATTCATTTTTTACAAGAGAAGGTGCACAAGTATGAAGGTTCATTTCAAGGGTGGAGTAACGAGCAAGAAAAATTGATGCCATGGAGAAATAATGACAAGCCAGCAGAAAACTTTCAACATCGTGGCACTGATAATGGAAGTCCATCTCCAGCACTGCTTTTTTCTTCAAAGAATGAGGAGAAAAATATTAGCATCTCCCCAACAATTCCAGGAAGTACCCAGAATGTAGAATCTGGCTTGAGTACAGCAACTACCTCCAAGACAATGGACCATCAGGCCGGAATAATGAACAAGGCTTTTCCAATTCCTATTTCTTCACAGCTAAATTTCTTCCCTCCAGCCAACATGGGCGGTCCAGGTGGAGTAGTGTCTCAGCTCGCACATATACCGGCTTCTGATGCCGAGAACAAATATCAATCTTCAGTGGAGTGTCAGACCATGGCGGCTACCAGTGAAAAGCTGAAAGAGAAAGAGCTCGCTATTGAAGGTGGTGCAATTAGCATATCAAGTGTGTACTCAAAAGGGTTGCTGCATACGCTTACACATGCACTGCAAAGTTCAGGGGTGGATCTGTCACAGGCTAGCATCTCAGTGCAAATTGAACTTGGCAAACAAGCAAACATGAGACCAACTGTACCCGTGTCAGTGTGTGGTGCTAAGGATGGTGAAGTACCTTCTAACAACCAAAAGATGATGCGCTCTAGAGTTGCTAGCTCTGGGAAGTCTGACCAAGCAATTAAGAAGCTAAAGATCTGCAGAAATTAA 1590 0.4478 MTANGGSCLKTHDFLQPLERLETKGSAKEEATDEISWVVEKAGPSVEHLLPGGIGTYSINHISYVNNNNNNNNQRLPKAETSLFVRQTTSTDRNDENSNCSSYTTSSGFTLWEDSSGKRGKTGKENNSGDRPSTGECAATKLGQWTSTERTSQSFCTNRHDSFSSRSSSQTTGQKNQSFMEMMKSARDSAQDEVLENEETFFLKKEPSNNQRELRVKVDGKSTDQKPNTPRSKHSATEQRRRSKINDRFQMLRELIPHSDQKRDKASFLLEVIEYIHFLQEKVHKYEGSFQGWSNEQEKLMPWRNNDKPAENFQHRGTDNGSPSPALLFSSKNEEKNISISPTIPGSTQNVESGLSTATTSKTMDHQAGIMNKAFPIPISSQLNFFPPANMGGPGGVVSQLAHIPASDAENKYQSSVECQTMAATSEKLKEKELAIEGGAISISSVYSKGLLHTLTHALQSSGVDLSQASISVQIELGKQANMRPTVPVSVCGAKDGEVPSNNQKMMRSRVASSGKSDQAIKKLKICRN 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04696 529 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 9 526 IPR044295 GO:0003700|GO:0006351|GO:0046983
Viun3g04696 529 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 227 300 IPR036638 GO:0046983
Viun3g04696 529 CDD bHLH_AtBIM_like 228 304 - -
Viun3g04696 529 MobiDBLite consensus disorder prediction 111 177 - -
Viun3g04696 529 Pfam Helix-loop-helix DNA-binding domain 231 280 IPR011598 GO:0046983
Viun3g04696 529 MobiDBLite consensus disorder prediction 203 245 - -
Viun3g04696 529 MobiDBLite consensus disorder prediction 502 516 - -
Viun3g04696 529 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 229 279 IPR011598 GO:0046983
Viun3g04696 529 SMART finulus 235 285 IPR011598 GO:0046983
Viun3g04696 529 MobiDBLite consensus disorder prediction 127 177 - -
Viun3g04696 529 FunFam BHLH domain class transcription factor 227 299 - -
Viun3g04696 529 Gene3D - 226 301 IPR036638 GO:0046983
Viun3g04696 529 MobiDBLite consensus disorder prediction 495 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04696 Viun-Chr3 54345593 54352802 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04696 6 481 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G08130 46.169 8.12e-106 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun3g04696 HLH 4.5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04696 - - gmx:100808016 827.009