Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04687 ATGGGAAGGGGAAGAGTGGAGTTGAAGAGGATCGAAAACAAGATCAACAGACAAGTCACCTTCTCAAAGAGACGCTCTGGTTTGATCAAGAAAGCCCGCGAGATCTCTGTGCTTTGCGATGCTGATGTGGCTCTCATAGTCTTCTCTACTAAAGGCAAACTTTTGGAATACTCCAACCAACCTTCTGTGGAAAGAATTATTGATCGGTATGAGAGGCATTCATATGCGGAGAGGCAAGAAGGTGGAAGTGATCAAGCACCAAATGAAAACTGGGCCATAGAACACGAAAAACTGAAGGCTAGGGTGGAAGTACTACAGCTACATCAAAGGAATTTCATGGGAGAAGACCTTGATAGCTTAAATCTTAGAGGACTTCAGAGTTTAGAACAACAACTTGATTCCGCCCTCAGACACATTAGATTACGAAAGAACCAAGCCATGCATGAATCTATTTCAGGTCTTCAGAAAAAGGACAAGGCACTTCGGGAACGTAACAACGTGCTCGCCAAGAAGATAAAAGAAAAAGAGAAGGCACTGGTCCCTCAAGAACAGGAAGCGTTGCTAAATAACGGGGATGTGACTTCTGTCATGGTAACTAAGCCATTGGAGTCCCTGAATATTGGATGTAGAGGGTCCCCAGAAGCGAAATATGATGAAGGAACTCCAACATCAACTCAACCTAAAACCGTAATTCCTCCATGGATGATGACTCTTCCAACAGATGAATAG 729 0.4376 MGRGRVELKRIENKINRQVTFSKRRSGLIKKAREISVLCDADVALIVFSTKGKLLEYSNQPSVERIIDRYERHSYAERQEGGSDQAPNENWAIEHEKLKARVEVLQLHQRNFMGEDLDSLNLRGLQSLEQQLDSALRHIRLRKNQAMHESISGLQKKDKALRERNNVLAKKIKEKEKALVPQEQEALLNNGDVTSVMVTKPLESLNIGCRGSPEAKYDEGTPTSTQPKTVIPPWMMTLPTDE 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04687 242 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Viun3g04687 242 Coils Coil 125 145 - -
Viun3g04687 242 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Viun3g04687 242 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Viun3g04687 242 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Viun3g04687 242 Pfam K-box region 85 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Viun3g04687 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Viun3g04687 242 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Viun3g04687 242 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Viun3g04687 242 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 166 - -
Viun3g04687 242 MobiDBLite consensus disorder prediction 211 232 - -
Viun3g04687 242 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Viun3g04687 242 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Viun3g04687 242 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Viun3g04687 242 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Viun3g04687 242 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04687 Viun-Chr3 54269159 54274979 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04687 1 203 MADS-box Gene Family AT1G26310 55.610 1.26e-76 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Viun3g04687 K-box 3.3e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04687 K09264 K09260 gmx:100798351 370.163