Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04685 ATGGGAAGAGGGAGGGTTGAACTCAAGAGGATAGAGAACAAAATCAACAGGCAAGTCACATTTGCCAAGAGAAGAAATGGCTTGCTCAAGAAGGCTTATGAGCTCTCAGTTCTTTGTGATGCTGAGGTTGCCCTCATCATCTTTTCTAACCGTGGCAAGCTCTATGAGTTCAGCAGCACCTCAAGTATGATGAAAACACTGGAGAAGTACCAGAAGTACAGTTACAGTGCACTGGAGACCACCCGACCTATTAACGACATTCAGAACTACCAGGAATATTTGAGATTAAAAGCAAGGGTAGAAGTCTTGCAACGTTCACAAAGGAACCTACTTGGGGAAGATCTTGCCCAAATGAATACAACTGATCTTGAGCAGCTAGAGAATCAACTAGAGGTAGCACTGAAGAATATTAGGTCAACAAAGACTCAATTCATGCTTGACCAGCTTGCTGATCTTCACCACCGGGAAACATTGCTTGTTGAAACTAATAATGTGTTAAGGAGTAAGTTGGAAGAAAGTAATAACTCACAAATCCCAGTGAGTCTGGGTTTGGAAGCTGGAGGGTCTAACATGAATTACACAAACTTTCCTCCTCAATCAGAGGGATTCTTCCATGCAGTGGGAGTGAATCCCAGCTTGCAAATTGGATTCAACCAGATTGGTGGTGATGATGCAAACGTTGGAGCTTCGTCCTTGAGTATGCAAGGATTCGCTGCTGGGTGGATGCTTTGA 732 0.4372 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFSSTSSMMKTLEKYQKYSYSALETTRPINDIQNYQEYLRLKARVEVLQRSQRNLLGEDLAQMNTTDLEQLENQLEVALKNIRSTKTQFMLDQLADLHHRETLLVETNNVLRSKLEESNNSQIPVSLGLEAGGSNMNYTNFPPQSEGFFHAVGVNPSLQIGFNQIGGDDANVGASSLSMQGFAAGWML 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04685 243 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Viun3g04685 243 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 164 - -
Viun3g04685 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Viun3g04685 243 Coils Coil 116 143 - -
Viun3g04685 243 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Viun3g04685 243 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Viun3g04685 243 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Viun3g04685 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Viun3g04685 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Viun3g04685 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Viun3g04685 243 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Viun3g04685 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Viun3g04685 243 Pfam K-box region 88 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Viun3g04685 243 FunFam MADS-box transcription factor 1 13 88 - -
Viun3g04685 243 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04685 Viun-Chr3 54259907 54264480 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04685 1 216 MADS-box Gene Family AT5G15800 60.633 7.65e-87 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Viun3g04685 K-box 9.8e-26 No_clan