Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04683 ATGAAGGGTGATATGATGATAATAATGACAACACTAAAAAAGCTGAAGTCTTTGGTAATTTTATTTTTGAAAAGACAGAGAGAGAGAGTGAGAGAGTATGATAATGTCACTGGCAAGGGTGTTTCAAAGTTGAACACAGACTCAAAAGCCTTAACCTTGTTAAGGGTGGTGGCTGGCTATCTTGAGTTCTTGCTTCATTTTCATTGTGAAAGAAACTCTGCGCCGGAAGAAATGGAGTCTGTGTGGTTCTCCACCACTGGATCTGCTGTCCCCCGTGTTGGCTTCTTGGCCATCTTACTGCTGTCACTGCTATTGTGCACAACATTCTCTTCTACTGAAGCCTATGATGCACTTGATCCAACCGCCAACATTACAATCAAATGGGATGTCATAAGCTGGACACCGGACGGCTATATTGCTGTTGTTACAATGTACAACTTTCAACAGTATCGGCATATTCAGGCTCCTGGGTGGATACTAGGGTGGACATGGGCAAAGAAGGAAGTAATTTGGAATGTAGTGGGAGGCCAAACCACAGAGCAAGGGGATTGTTCAAGGTTCAAAGGGAACATTCCTCATTGTTGTAAGAAGGATCCAACTGTTGTGGATTTACTTCCTGGAACTCCTTACAACCAGCAGATTGCCAATTGTTGCACTGGGGGAGTCCTAACTTCATGGGCCCAGGACCCTGAACATGCAATAAGCTCATTTCAACTCAGTGTTGGTTCTGCAGGAACAACTAACAAAACGGTCAAACTGCCAAGAAATTTTACCCTCAAAGCACCAGGGCCTGGTTATACTTGTGGACCTGCAAAGATTGTGAAACCAACTAAATTTATTACCAAAGACAAGAGGAGAACCACTCAAGCATTGATGACCTGGAATGTTACTTGCACGTATTCTCAATTCCTAGCTCAGAAGACTCCAACTTGCTGTGTTTCTCTTTCATCCTTCTACAACAATACAATAGTAAACTGCCCTACCTGCACCTGTGGTTGCCAAAACAAAACAGAACCTGGAAGCTGTGTAGATCCTAATTCCCCACATTTAGCTTCAGTTGTATCACCCCCAGGCAAAGCTATAAGTACACCTCTGGTCCGGTGCACCAATCACATGTGTCCTATTCGAGTGCATTGGCACGTGAAACTTCAATATAAAGAGTACTGGAGGATCAAGATTACAATCACAAATTTCAATTACATAGTGAACTATTCACAATGGAACCTTGTTGTCCAGCATCCAAACTTTGACAATTTAACTCAGGTTTTCAGCTTTAACTACAAGCCGATAACGCCTTATATGGGCTTAAATGATACTGGTATGCTGTGGGGAGTAAAGTTCTACAATGATTTACTTACTTCAGCAGGACCCCTTGGGAATGTGCAGTCTGAGCTCTTATTCCGAAAGGACAAATCAACCTTCACATTTGATAAGGGATGGGCTTTCCCTCGAAGAATTTATTTCAACGGAGATAACTGTGTAATGCCACCTCCTGACGCCTATCCATGGCTGCCAAATGCAAGTTCAAGACTAGTTTTCTCTTTACTAAGCACAGTTTTTGGCACTTTAGCCTGTGTGGTAATGTTATTGACTTAA 1596 0.4261 MKGDMMIIMTTLKKLKSLVILFLKRQRERVREYDNVTGKGVSKLNTDSKALTLLRVVAGYLEFLLHFHCERNSAPEEMESVWFSTTGSAVPRVGFLAILLLSLLLCTTFSSTEAYDALDPTANITIKWDVISWTPDGYIAVVTMYNFQQYRHIQAPGWILGWTWAKKEVIWNVVGGQTTEQGDCSRFKGNIPHCCKKDPTVVDLLPGTPYNQQIANCCTGGVLTSWAQDPEHAISSFQLSVGSAGTTNKTVKLPRNFTLKAPGPGYTCGPAKIVKPTKFITKDKRRTTQALMTWNVTCTYSQFLAQKTPTCCVSLSSFYNNTIVNCPTCTCGCQNKTEPGSCVDPNSPHLASVVSPPGKAISTPLVRCTNHMCPIRVHWHVKLQYKEYWRIKITITNFNYIVNYSQWNLVVQHPNFDNLTQVFSFNYKPITPYMGLNDTGMLWGVKFYNDLLTSAGPLGNVQSELLFRKDKSTFTFDKGWAFPRRIYFNGDNCVMPPPDAYPWLPNASSRLVFSLLSTVFGTLACVVMLLT 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04683 531 PIRSF COBRA 87 531 IPR006918 GO:0010215|GO:0016020
Viun3g04683 531 PANTHER PROTEIN COBRA 103 518 IPR006918 GO:0010215|GO:0016020
Viun3g04683 531 Pfam COBRA-like protein 138 301 IPR006918 GO:0010215|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04683 Viun-Chr3 54222972 54226505 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04683 96 530 COBRA Gene Family AT3G02210 72.706 0.0 704
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04683 - - vun:114177145 1107.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04683 3 54222972 54226505 Viun3g04683 3 54222972 54226505 ECH
Viun3g04683 3 54222972 54226505 Viun9g00818 9 6122037 6125774 PCT