Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04681 ATGAACGGATTAAGAAGTGAACGAGCCCCTCTCTTGGAATCCGAGCGTGGCGGACGAGGAAAGACGGATGGTGGCTCGGAAGGTCAAGTAACAGACCTTGAACACGGTGACGCAGTGCCGGCGGCAAATGTGGGATTCTGTCGGGTGTTTTCACTCGCAAAACCTGAGGCTGGAAAGCTGGTGATCGGTACTGTGGCTCTTCTGATTGCAGCCACATCAAGTATCTTAGTTCAAAAATTTGGTGGGAAAATAATTGACATTGTCTCTAGGGACCTCCGGACTCCAGAGGAGAAAGATGAAGCTTTGGATGCTGTTAAGAACACCATACTAGAAATCTTTCTGATCGTTGTCTTTGGATCAATTTGCACTGCACTTCGAGCTTGGCTTTTTTATACTGCCAGTGAAAGGGTTGTTGCACGGCTGAGAAAGAATTTGTTCAGTCACCTTGTAAACCAGGAGATAGCTTTCTTTGATGTTACTCGAACCGGGGAACTTTTAAGTAGGCTATCTGAAGATACACAGATCATAAAGAATGCTGCGACTACCAATCTTTCTGAGGCCCTGAGAAACTTTTCAACTGCATTTATTGGTCTGAGTTTCATGTTTGCAACGTCATGGAAGTTAACGTTGTTAGCTTTGGCTGTTGTACCTGTTCTTTCCGTTGCTGTTCGCAAGTTTGGCCGTTACCTGCGTGAACTTTCTCATAAAACTCAAGCTGCTGCTGCACTAGCTTCATCAATTGCGGAGGAATCCTTTGGTGCAATAAGAACAGTAAGATCATTTGCCCAAGAAGATTTTGAAATAACGCGCTACTCAGAGAAAGTTGATGAAACACTTAATCTTGGACTTAAACAAGCTAAAGTTGTTGGACTCTTTTCTGGAGGCCTTAATGCTGCATCTACACTTTCAGTTATTGTAGTTGTTATATATGGAGCTAATTTGACAATCAGGGGTTACATGTCCTCTGGTGATCTTACATCTTTCATTCTTTATAGTCTCTCAGTGGGTTCTTCTATATCTGGTCTGTCAGGATTGTATACAGTAGTTATGAAAGCTGCAGGTGCTAGCAGAAGGGTATTTCAACTTTTGGATCGTACCTCATCGATGCCCAAGGCAGGAAGTAAATGTCCACTGGGTGATCAAGATGGGGAAGTAGAACTAGATGATGTGTGGTTTGCCTATCCATCACGCCCTAGTCATCCAGTGCTCAAGGGCATTACATTGAAACTGCATCCAGGATCAAAGGTTGCTCTTGTTGGTCCAAGTGGTGGTGGAAAGAGTACAATTGCGAACTTAATTGAAAGATTTTACGACCCAACCAAGGGAAAGATTCTACTGAATGGGGTTCCTTTGGTAGAAATATCACACCAGCATTTACACAGAAAGATCAGTATAGTGAGTCAGGAGCCTACACTCTTCAACTGTTCCATAGAGGAGAACATAGCTTATGGATTTGATGGCAAAGTGGACCCAGTTGATTTAGAGAATGCTTCTAAAATGGCCAATGCACATGAATTTATATCAAAATTCCCAGAGAAATACCAGACCTTTGTTGGAGAGCGTGGGGTAAGGCTTTCAGGTGGGCAGAAACAGAGAATAGCAATTGCTAGAGCCCTTCTTATGAACCCAAAAATTCTCCTCTTGGATGAAGCTACCAGTGCCCTAGATGCTGAAAGTGAATACCTTGTGCAGGATGCCATGGAGTCTCTCATGAAAGGAAGAACAGTTCTAGTCATTGCTCATAGGTTATCAACCGTTAAAACTGCTAACACCGTTGCAGTTATATCTGATGGCCAAATAGTTGAGAGTGGCACCCATGATGAGCTTCTTAGCAAGGATGGTGTCTATACTGCATTAGTGAAGAGACAACTACAAACAACAACAAAAGTCGAAATCTAG 1899 0.4313 MNGLRSERAPLLESERGGRGKTDGGSEGQVTDLEHGDAVPAANVGFCRVFSLAKPEAGKLVIGTVALLIAATSSILVQKFGGKIIDIVSRDLRTPEEKDEALDAVKNTILEIFLIVVFGSICTALRAWLFYTASERVVARLRKNLFSHLVNQEIAFFDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNFSTAFIGLSFMFATSWKLTLLALAVVPVLSVAVRKFGRYLRELSHKTQAAAALASSIAEESFGAIRTVRSFAQEDFEITRYSEKVDETLNLGLKQAKVVGLFSGGLNAASTLSVIVVVIYGANLTIRGYMSSGDLTSFILYSLSVGSSISGLSGLYTVVMKAAGASRRVFQLLDRTSSMPKAGSKCPLGDQDGEVELDDVWFAYPSRPSHPVLKGITLKLHPGSKVALVGPSGGGKSTIANLIERFYDPTKGKILLNGVPLVEISHQHLHRKISIVSQEPTLFNCSIEENIAYGFDGKVDPVDLENASKMANAHEFISKFPEKYQTFVGERGVRLSGGQKQRIAIARALLMNPKILLLDEATSALDAESEYLVQDAMESLMKGRTVLVIAHRLSTVKTANTVAVISDGQIVESGTHDELLSKDGVYTALVKRQLQTTTKVEI 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04681 632 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 46 626 IPR039421 -
Viun3g04681 632 SMART AAA_5 412 606 IPR003593 GO:0016887
Viun3g04681 632 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 385 622 IPR003439 GO:0005524
Viun3g04681 632 CDD ABC_6TM_AtABCB27_like 63 359 - -
Viun3g04681 632 CDD ABC_MTABC3_MDL1_MDL2 385 623 - -
Viun3g04681 632 Pfam ABC transporter transmembrane region 60 333 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun3g04681 632 FunFam ABC transporter B family member 25 112 382 - -
Viun3g04681 632 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 378 623 IPR027417 -
Viun3g04681 632 ProSitePatterns ABC transporters family signature. 525 539 IPR017871 GO:0005524|GO:0016887
Viun3g04681 632 FunFam ABC transporter B family member 25 383 625 - -
Viun3g04681 632 MobiDBLite consensus disorder prediction 1 31 - -
Viun3g04681 632 Gene3D - 383 627 IPR027417 -
Viun3g04681 632 Pfam ABC transporter 403 553 IPR003439 GO:0005524
Viun3g04681 632 PIRSF ABC_prm/ATPase_B 16 631 - -
Viun3g04681 632 SUPERFAMILY ABC transporter transmembrane region 48 364 IPR036640 GO:0005524|GO:0016020
Viun3g04681 632 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 61 351 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun3g04681 632 Gene3D ABC transporter type 1, transmembrane domain 112 382 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04681 Viun-Chr3 54169569 54176229 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04681 46 630 Calmodulin-binding Proteins AT2G36910 33.277 8.46e-92 307
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04681 - - var:108320153 1160.98