Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04670 ATGATGAATGAAAGTTCAAGTAAAGTTCAGGAAGGCAACGAAGAAGAGGGCGAGAACATTAAAATTGAGAAGTTGTCAAAGGCAGGGTCGTCCTCAAGATCATGGTCAGCATTCAGAAACCCAAGAATTGTACGAGTGTCTCGTTCTTTGGGAGGAAAAGATAGGCACAGCAAGGTTTGCACCATTAGGGGACTGAGGGACCGAAGGATTAGACTGTCTGTGCCCACAGCAATTCAGTTGTATGATCTTCAAGACAAGCTTGGACTGAACCAACCTAGCAAGGTGGTAGATTGGTTGCTTGAAGTCACCAAATCTGATATTGATAAACTCCCACCACTTCAATTTCCTCACTGTTTTGCTCAGTTTCATCAACAAACCCCACTCTCAGCTACCTCTCACTTCTCTCTTGGAAGCTTGTATGATGGTGTTGGGGGAAACCAAAACCTCATCACAAAGTCAACAAGGTATTGGGATTTAGATTCTCAAAACCGTACTGAGTTAGCTGAAGGTGTCTCAGCCTCCCAGAAGGGCAAGTTCTGGACGAAACCAAATGAACTAGAGAATCATCAAAATGGAATTGTTGGTGGTAGTGGTAGTACTCGTAATAGAGAAGAATCTTCTTCATCTCATTGTAAGGTGTTTCCCCATGGGACTAATAGCTCTTATTTACCTGGTGGTTTGTCAAACAATGGCATTACACATAACTCCTATCACCATTCTGAGCCTTCAACTCTATCTTTATCCCACCTTGGAAGCCATGAATTATTTCCTTCCCATCCAAGCAGTGGCAGTAGTGTGCAATTTTCATCTGGTCCCCAATTACTTTTTTGTCCACCTTCTGCTACACCATCTGCTTTTTACTCAGTGGAAAGCGATCCAAGACAATCCAACAATGTTCAGATCTTTAGCTCAAGTTCCCAAGTCATGATGCCTCATCCTCTCATCCAATCTATTCATTCCACCACTTCACCCCTTAGACGCCTTCCAACAACATTGAGTTCCAAGCTTCTTGATTCAGATAACAACCATCGTAGCCAACAAGGTAAGGGTACTACTCGTTCTTGA 1065 0.431 MMNESSSKVQEGNEEEGENIKIEKLSKAGSSSRSWSAFRNPRIVRVSRSLGGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLGLNQPSKVVDWLLEVTKSDIDKLPPLQFPHCFAQFHQQTPLSATSHFSLGSLYDGVGGNQNLITKSTRYWDLDSQNRTELAEGVSASQKGKFWTKPNELENHQNGIVGGSGSTRNREESSSSHCKVFPHGTNSSYLPGGLSNNGITHNSYHHSEPSTLSLSHLGSHELFPSHPSSGSSVQFSSGPQLLFCPPSATPSAFYSVESDPRQSNNVQIFSSSSQVMMPHPLIQSIHSTTSPLRRLPTTLSSKLLDSDNNHRSQQGKGTTRS 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04670 354 MobiDBLite consensus disorder prediction 184 204 - -
Viun3g04670 354 MobiDBLite consensus disorder prediction 335 354 - -
Viun3g04670 354 MobiDBLite consensus disorder prediction 9 23 - -
Viun3g04670 354 MobiDBLite consensus disorder prediction 1 33 - -
Viun3g04670 354 Pfam TCP family transcription factor 52 164 IPR017887 -
Viun3g04670 354 MobiDBLite consensus disorder prediction 184 217 - -
Viun3g04670 354 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 32 337 IPR005333 GO:0003700
Viun3g04670 354 ProSiteProfiles TCP domain profile. 52 110 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04670 Viun-Chr3 54123212 54125324 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04670 36 123 TCP Transcription Factor Family AT5G60970 84.091 1.60e-49 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Viun3g04670 TCP 3.8e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04670 - - pvu:PHAVU_003G183700g 579.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04670 3 54123212 54125324 Viun9g00835 9 6255576 6258144 PCT