Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04660 ATGGCCGCAAAATCAATCACACCCGACGCCGTTTCGATGCTCCTCGCTAACCCTTCACCAGATTCTTCGTCGGATCTTCCCGACATCGTTGTTCAAGTAGTTGATCTCAAGCCGAGCGGCAACAGATACATGTTCACAGCCAGTGATGGAAAGAAGAAACTGAGGGCAATTCTTCCTTCGAATATGTATTCTGAGGTTCTCTCTGGGAACATTCAAAACCTAGGTCTTGTTCGAATTCTTGATTACACTCTCAACGACATTCCTAACAAATCTGAAAAGTACCTTATTGTAACGAAATGTGAGCCGGTAGCTCCCGCTCTGGAAAAGGAGATCAAGAGCGAGGAGCCTGGTATTCTTTTGAAACCCAAAGAAGAGGTTGGAGTAAAGAGCGAAGGTGCTGCTGGGATTGTTTTGAAGCAAAAGCAGGAAGTGGTGACAAAATCTGCTGCGCAGATTCTAAATGATCAACATAGAAATTCGGCTCCTGCTGCCCGCATGGCAATGACACGTAGGGTGCGTCCTCTCGTTTCGTTGAATCCTTATCAGGGTAATTGGACGATAAAGGTTAGCGTTACGAACAAAGGAAACATGCGAACCTATAAGAACGCTAGGGGTGAAGGTTGTGTATTCAACGTTGAATTGACGGACGAAGAAGGTACTCAGATCCAGGCAACCATGTTTAACGATGCCGCGAGGAAATTTTACGACAAATTTGTTCTGGGAAAGGTTTACTATATTTCGAAGGGGACATTGAAAGTTGCCAACAAACAGTTCAAAACTGTTCAAAATGATTATGAAATGACGCTGAACGAGAATTCTGAGGTGGAAGAGGTGGCGGGTGAAGCAACTTTTGTCCCGGAAACAAAATTTAGCTTTGTCCAGATTGATCAGCTAGGTCCTTATGTCAACAAGTCTGAACTTGTGGATGTCATTGGAGTTGTTAAGAACGTGTCTTCAACAATGAGCATTCGTAGGAAGAGTGACAATGAGAGCATTCCAAAGCGCGACATTACTATCGCTGATGAAACGAAGAAGACAGTAGTTGTGTCCTTGTGGAATGATCTTGCTACAAACACAGGACAAGATTTACTGGACATTGCTGATCAATCTCCAGTTGTTGCAATTAAGTCTCTCAGGGTTGGGGACTTCCAAGGCGTTTCTTTGTCAACTATAAGCAGAAGTGTAATTCTGGTAAATCCAGACGTACCCGAAGCAAAGAAACTCAGAAGCTGGTATGAATCTGAAGGCAAAGATGCTGCAATGGACTCTGTAGGTTCTGGTTCAAGTCCAACGTCTAATAATGGAACCAGATCAGTGTACTCTGATCGTGTTCCACTTGCTCACATAACCTCCAACCAATCATTGGGGGAGACGAAGCCTGCGTTTTTCAGCCTTAGAGGATATATAAGCTTCATAAAGCCTGACCAGGCAATGTGGTATCGTGCCTGTAAGACATGCAATAAGAAAGTTACTGAAAGCATTGGTTCTGGATATTGGTGCGAAGGATGCCAGAAAAGCGATGAACAGTGCAGTTTAAGGTATATTATGGTTGCCAAGGTTTGCGATACAAGTGGCGAGGCTTTCGTCTCCGTCTTTAATGAGGAAGCTGAGAAGATAGTTAGATGCTCTGCTGATGATTTAGATGACCTTAAGTCGCAAGAAGGAGAAGATAATCCTTATAGTCTGAAATTGAAGCAAGCAACTTGGGTTCCGCATCTTTTCCGCGTTAGTGTTACCCAGAACGAGTATAATAACGAGAAGCGGCAAAGGATAACGGCTCGAGCGGTTGTTCCTGTTGACTTCGCTGCTGAGTCAAGGATGATGCTGGAAGAAATATCAAAGATGAGAGCTTAA 1854 0.4396 MAAKSITPDAVSMLLANPSPDSSSDLPDIVVQVVDLKPSGNRYMFTASDGKKKLRAILPSNMYSEVLSGNIQNLGLVRILDYTLNDIPNKSEKYLIVTKCEPVAPALEKEIKSEEPGILLKPKEEVGVKSEGAAGIVLKQKQEVVTKSAAQILNDQHRNSAPAARMAMTRRVRPLVSLNPYQGNWTIKVSVTNKGNMRTYKNARGEGCVFNVELTDEEGTQIQATMFNDAARKFYDKFVLGKVYYISKGTLKVANKQFKTVQNDYEMTLNENSEVEEVAGEATFVPETKFSFVQIDQLGPYVNKSELVDVIGVVKNVSSTMSIRRKSDNESIPKRDITIADETKKTVVVSLWNDLATNTGQDLLDIADQSPVVAIKSLRVGDFQGVSLSTISRSVILVNPDVPEAKKLRSWYESEGKDAAMDSVGSGSSPTSNNGTRSVYSDRVPLAHITSNQSLGETKPAFFSLRGYISFIKPDQAMWYRACKTCNKKVTESIGSGYWCEGCQKSDEQCSLRYIMVAKVCDTSGEAFVSVFNEEAEKIVRCSADDLDDLKSQEGEDNPYSLKLKQATWVPHLFRVSVTQNEYNNEKRQRITARAVVPVDFAAESRMMLEEISKMRA 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04660 617 FunFam Replication protein A subunit 5 115 - -
Viun3g04660 617 Pfam Replication factor-A protein 1, N-terminal domain 6 103 IPR007199 GO:0003677|GO:0005634|GO:0006260
Viun3g04660 617 SUPERFAMILY Nucleic acid-binding proteins 173 279 IPR012340 -
Viun3g04660 617 SUPERFAMILY Nucleic acid-binding proteins 441 615 IPR012340 -
Viun3g04660 617 Gene3D - 285 425 IPR012340 -
Viun3g04660 617 Coils Coil 533 553 - -
Viun3g04660 617 PANTHER REPLICATION FACTOR A 1, RFA1 185 578 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Viun3g04660 617 FunFam Replication protein A subunit 171 280 - -
Viun3g04660 617 SUPERFAMILY Nucleic acid-binding proteins 5 107 IPR012340 -
Viun3g04660 617 SUPERFAMILY Nucleic acid-binding proteins 290 417 IPR012340 -
Viun3g04660 617 CDD RPA1_DBD_A 174 277 - -
Viun3g04660 617 Gene3D - 426 615 IPR012340 -
Viun3g04660 617 Pfam OB-fold nucleic acid binding domain 185 271 IPR004365 GO:0003676
Viun3g04660 617 CDD RPA1_DBD_B 307 413 - -
Viun3g04660 617 CDD RPA1_DBD_C 448 614 IPR047192 -
Viun3g04660 617 FunFam Replication protein A subunit 428 615 - -
Viun3g04660 617 NCBIfam replication factor-a protein 1 (rpa1) 5 614 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Viun3g04660 617 MobiDBLite consensus disorder prediction 419 439 - -
Viun3g04660 617 MobiDBLite consensus disorder prediction 424 439 - -
Viun3g04660 617 Gene3D - 5 115 IPR012340 -
Viun3g04660 617 FunFam Replication protein A subunit 284 423 - -
Viun3g04660 617 Pfam Replication factor-A C terminal domain 462 607 IPR013955 -
Viun3g04660 617 Gene3D - 171 280 IPR012340 -
Viun3g04660 617 Pfam Replication protein A OB domain 302 399 IPR031657 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04660 Viun-Chr3 54050056 54053287 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04660 5 614 Core DNA Replication Machinery Family AT5G08020 69.558 0.0 911
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04660 K07466 - gmx:100777091 1015.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04660 3 54050056 54053287 Viun3g04660 3 54050056 54053287 ECH