Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04656 ATGGCTTTCTTTGGTAGACTTGGGAATTTGTTAAGACAGACAGCTAGCAGACAGGTTACTTCAGAGTTGCGGTCGTCCCCTTCCTTATTCCAGGCCATACGCGGTTTCTCTTCCGCTCCAAGCTCCAAGCTGTTTATAGGAGGTGTTTCGTTTTCCACTGATGAGCAAAGCTTGAGGGAAGCTTTTTCAAAATATGGTGAAGTTGTTGATGCAAGGATAATTATGGATCGTGAAACTGGTAGATCCAGGGGGTTTGGATTTATTACATACACGTCTGTTGAGGAGGCATCGAGTGCTATCCAGGCCTTGGATGGTCAGGACCTTCATGGTCGCCAGATTAGGGTAAATTATGCTAATGAAAGACCGCGAGGTGGTGGCTATGGCGGTGGATATGGTGGTGGATATGGCGCTGGAGGTGGTGGTGGCTATGGAGGTGCATATGGTGGTGGTGGCGGCTATGGTGGAAATGTTGCTGGTGGTTATGGAGGTGGTGGTGGCTATGGTGGAAATGCTGGAGGTGGTTATGGTGGTGGTAGCTATGGTGGAAATGCTGGAGGTGGTTATGGTGGTGGTGCCGGTGGCTATGCATCAGGCGGCAATTTTGGGGACAGTGGCTCTGGGAATAACTATCCTGCTGCTGACAATTTTGGAACTAGTGGTGCTGGTGGCAGCTACAGTGGGAATTTTGGTGATGCTGGTGGAATAGGAAATCATGAAAGCTCTGGTGGTTTTGGCAGTAGTGGATATGATGGAAGTGCTGTGGATGGTAGCGGTGCAAGTACTGGAACCAGCTTTGCTGATGGAAGTGGAGGGTTAGGCGGTGGTCAATTTGATAGCAAAGCAAGCAGCAATGGAGATGAGGATTTTGGAGATTATAGGGATGACAAGGACGATGCTGATAATTTTGCCAAAAGGGCTTGA 921 0.4897 MAFFGRLGNLLRQTASRQVTSELRSSPSLFQAIRGFSSAPSSKLFIGGVSFSTDEQSLREAFSKYGEVVDARIIMDRETGRSRGFGFITYTSVEEASSAIQALDGQDLHGRQIRVNYANERPRGGGYGGGYGGGYGAGGGGGYGGAYGGGGGYGGNVAGGYGGGGGYGGNAGGGYGGGSYGGNAGGGYGGGAGGYASGGNFGDSGSGNNYPAADNFGTSGAGGSYSGNFGDAGGIGNHESSGGFGSSGYDGSAVDGSGASTGTSFADGSGGLGGGQFDSKASSNGDEDFGDYRDDKDDADNFAKRA 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04656 306 PRINTS Eggshell protein signature 197 215 - -
Viun3g04656 306 PRINTS Eggshell protein signature 137 152 - -
Viun3g04656 306 PRINTS Eggshell protein signature 23 39 - -
Viun3g04656 306 PRINTS Eggshell protein signature 168 178 - -
Viun3g04656 306 MobiDBLite consensus disorder prediction 245 306 - -
Viun3g04656 306 Gene3D - 12 138 IPR012677 -
Viun3g04656 306 SMART rrm1_1 43 116 IPR000504 GO:0003723
Viun3g04656 306 MobiDBLite consensus disorder prediction 245 267 - -
Viun3g04656 306 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 7 199 - -
Viun3g04656 306 SUPERFAMILY RNA-binding domain, RBD 37 152 IPR035979 GO:0003676
Viun3g04656 306 CDD RRM2_NsCP33_like 43 118 - -
Viun3g04656 306 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 120 IPR000504 GO:0003723
Viun3g04656 306 MobiDBLite consensus disorder prediction 284 306 - -
Viun3g04656 306 FunFam Glycine-rich RNA-binding protein 3, mitochondrial 12 143 - -
Viun3g04656 306 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 114 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04656 Viun-Chr3 54032205 54035600 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04656 42 122 Eukaryotic Initiation Factors Gene Family AT4G34110 35.802 3.37e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04656 K12741 - gmx:100782808 226.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04656 3 54032205 54035600 Viun3g04656 3 54032205 54035600 ECH