Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04650 ATGGCGTCTTCGTCGTCGCTGACGAAGCGATGCCACTACGAAGTGCTCGATCTCTCGCAAGATAGTTCTCCCGAGGAGATCCGCTCCTCCTACCGCCGCCTCGCCCTTCAGCGCCACCCAGACAAGCTCATAAAATCGGGTCTCTCCCAGGAAGAAGCCACTGCGCAGTTCCAGGAACTCCAACACGCATACGAAGTTCTTTCCGATCCCAAGGAACGCGCTTGGTACGATTCCCACCGTTCTCAAATCCTCTTCTCCGACCCCAATTCCCTCTCCAAATCGGTCGTCCCGGACCTCTTCTCCTTCTTCTCCAACACCGTCTATTCCGGCTACTCTGACACCGGAAAGGGCTTCTATAAAGTTTATTCTGATGTTTTCGATAAAATCCACGCTAACGAGATCAATTTCGCGCGGAAAATGGGGCTTGGAGTTGATGCGGTTCGACAGGCTCCTGTAATGGGGAACTTGGATAGCCCCTACGCTCAGGTCACTGCGTTTTATGGATACTGGTTAGGGTTTTGTACTGTGATGGACTTTTGTTGGGCGGATGAGTATGACGCTATGGCAGGGCCGAACCGGAAGTCGCGGCGGCTTATGGAAGAGGAGAATAATAAGGCGAGGAGGAAGGCGAAAAAGGAGTATAATGATACTGTGAGGAGGTTGGGGGATTTTGTGAAGAAGAGGGATAAGAGGGTGATTGATATGAGGGTGAAGAAGAGTGTGGAGATGGAGAGGAAGAAGGAAGAGGAGAGAGAGAAAAAAAAGAGGTTGGAGAAGGAGAAGAAGGAGAGGGCCATGGCGTATGAGGAGCCTGATTGGGCTAAGGTTGAGGAGGAGGAGGTGGTGGAGGAATGGGTTGAGGAGGGTGAGGAGGAGAAGAAGAATGATAAGGAGTTTTATTGTGTGCTGTGTGGGAAGAAGTTTAAGAGTGAAAAGCAGTGGAAAAACCATGAGCAGTCCAAGAAGCATAAGGAGAGGGTTGCGGAGTTCAGGGATTCCATTGGTGATGAGGAGGATTTGGAAGAAGGAAAGGAGGGACTGGGAAGTGAGGAAGATGGGGTTGGAGTGGATGGTGATGGTGGTCATGGTGTTGGTGATTTGGAGGCGAGGATTCGGGATGGTCTTAATGTTGAAGAGGGGGTAATTAAAAACGGGGGTGAATCGGATGATGATGATGATGGTGGTGGTGATGAGTTTTACGATGCTTCGCATGTGAAGGAGGGGGAAGATTCCAACGGGTCGGTTAATCTTGATGATAGTGGCAATGAAGATGATGATAACGATGAAAATGGTGTTCTTGAAGCAATGGTGGCTGGCCACAAGAACAGAAAGCCACGAGCTTCAACCCACAAATCCAAGGCTGCAATAGCTCAATCTCAAATTGAAACTGAGGAGGATGAATTTGGCCCTATGGAATACAGCAACCGGAAGAGCACAAGAAAGAAACGTAGAGCTAAGAAAGAGAAGGGTAGGGAAAATTGGGAAGAATCTCAGGGGAATGCTGGCAGTTGCAATGATGAGAATATAAACGGTAATGGAAATGATAATTCTCGTGCAGAGGAGTCTTGTTCCCAACATTTTGTGGAAAATGGGGATAACATTATAGGAAATGAGCAGCAGGTTAGTAGAGGTAATAAGATTTCAAACCAACCTGCTGATACAAAGGGAGCTGGCAAGGACACAAAAATCAAAGCCAAAATTTCATCCAAAGGAAGAAAAGCCAAGGTGACATCGAAAAACGTTGGTAATACTTGTGATGCGTGTGGAGAGGAGTTTGACTCAAGAAATAAATTACATAAACATCTTGGCGATTCTGGGCATGCGACCATAATAAGAGGTCGATAA 1845 0.4764 MASSSSLTKRCHYEVLDLSQDSSPEEIRSSYRRLALQRHPDKLIKSGLSQEEATAQFQELQHAYEVLSDPKERAWYDSHRSQILFSDPNSLSKSVVPDLFSFFSNTVYSGYSDTGKGFYKVYSDVFDKIHANEINFARKMGLGVDAVRQAPVMGNLDSPYAQVTAFYGYWLGFCTVMDFCWADEYDAMAGPNRKSRRLMEEENNKARRKAKKEYNDTVRRLGDFVKKRDKRVIDMRVKKSVEMERKKEEEREKKKRLEKEKKERAMAYEEPDWAKVEEEEVVEEWVEEGEEEKKNDKEFYCVLCGKKFKSEKQWKNHEQSKKHKERVAEFRDSIGDEEDLEEGKEGLGSEEDGVGVDGDGGHGVGDLEARIRDGLNVEEGVIKNGGESDDDDDGGGDEFYDASHVKEGEDSNGSVNLDDSGNEDDDNDENGVLEAMVAGHKNRKPRASTHKSKAAIAQSQIETEEDEFGPMEYSNRKSTRKKRRAKKEKGRENWEESQGNAGSCNDENINGNGNDNSRAEESCSQHFVENGDNIIGNEQQVSRGNKISNQPADTKGAGKDTKIKAKISSKGRKAKVTSKNVGNTCDACGEEFDSRNKLHKHLGDSGHATIIRGR 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04650 614 Pfam DnaJ domain 12 77 IPR001623 -
Viun3g04650 614 Gene3D Classic Zinc Finger 287 349 - -
Viun3g04650 614 SUPERFAMILY Chaperone J-domain 8 81 IPR036869 -
Viun3g04650 614 ProSitePatterns Zinc finger C2H2 type domain signature. 301 323 IPR013087 -
Viun3g04650 614 MobiDBLite consensus disorder prediction 398 413 - -
Viun3g04650 614 MobiDBLite consensus disorder prediction 496 555 - -
Viun3g04650 614 SMART c2h2final6 583 607 IPR013087 -
Viun3g04650 614 SMART c2h2final6 299 323 IPR013087 -
Viun3g04650 614 Coils Coil 238 270 - -
Viun3g04650 614 PRINTS DnaJ domain signature 13 31 IPR001623 -
Viun3g04650 614 PRINTS DnaJ domain signature 31 46 IPR001623 -
Viun3g04650 614 PRINTS DnaJ domain signature 52 72 IPR001623 -
Viun3g04650 614 PANTHER DNAJ PROTEIN JJJ1 HOMOLOG 5 610 IPR044648 -
Viun3g04650 614 Gene3D DnaJ domain 2 93 IPR036869 -
Viun3g04650 614 ProSiteProfiles dnaJ domain profile. 11 80 IPR001623 -
Viun3g04650 614 MobiDBLite consensus disorder prediction 311 575 - -
Viun3g04650 614 ProSitePatterns Zinc finger C2H2 type domain signature. 585 607 IPR013087 -
Viun3g04650 614 Coils Coil 196 216 - -
Viun3g04650 614 CDD DnaJ 11 69 IPR001623 -
Viun3g04650 614 SMART dnaj_3 10 72 IPR001623 -
Viun3g04650 614 MobiDBLite consensus disorder prediction 347 389 - -
Viun3g04650 614 MobiDBLite consensus disorder prediction 311 333 - -
Viun3g04650 614 SMART ZnF_U1_5 296 330 IPR003604 GO:0003676|GO:0008270
Viun3g04650 614 Pfam Zinc-finger double-stranded RNA-binding 299 324 IPR022755 -
Viun3g04650 614 SUPERFAMILY beta-beta-alpha zinc fingers 290 339 IPR036236 -
Viun3g04650 614 ProSiteProfiles Zinc finger C2H2 type domain profile. 299 328 IPR013087 -
Viun3g04650 614 ProSitePatterns Nt-dnaJ domain signature. 57 76 IPR018253 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04650 Viun-Chr3 53997254 54000382 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04650 1 610 C2H2 Transcription Factor Family AT1G74250 51.824 0.0 549
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun3g04650 DnaJ 1.3e-20 CL0392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04650 K09506 - gmx:100788305 855.129