Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04636 ATGGAAGCAGATCAAATTCAAGAATTCAAACACGCGTGCAAGTTCTGCGGCAAGTGCTTCCCTTGTGGCAGATCCTTGGGGGGTCACATGAGGTCTCATATCACCAACTTGTCGTCGGAGGAAAAAGAAAAGCTGCCGGCGAGGAAGCTTTTTTCGTCGTCTCTCAACAATGATGGAGACAAAGATTCCGAAGCTGCTGCAACCAACGCTGGCTATGGCCTCCGAGAGAACCCCAAGAAGACTTGGAGAATCTCGGATCATTCGAGCGAAGACGCTTTGGTGTTTGACAAGTTCTGCAAAGAGTGTGGCAAAGCCTTCCACTCTTGGAAGGCCTTGTTTGGCCACATGAAATGCCACTCCGAGAAAGAGAGAGTTTCTAACAGCTTGGAAGATCAAGATTCGTGGACTAATGCTAAGGTGGTCATGGATAGTCAGTCTGATAACGAAGCAACTGCTCCGAATAAGAGAAGAAGGTCCAAGAGAAGAACAAGGTACACCGTTGCTTCTGCTGCAGCAACTTCTTCGGTTGTGTCTTTCGCCAATCCTTCCTCTTCTCTCTCTGAGGTTGAGCAGGAGCAAGAAGAGGTTGCTATGAGCTTGATGATGCTCAGTAGGGACGTGAGTCCTTGGAGTGGTCCTCATTCTGTTGCCGAATCCTCTGACAACAACTCTGCTTATTTCGAAGCTCGATCTTCAGCTCGAACTAATCTGGTTGCCAAATTTGATGGCACCACTAACTTCACGCCTAACACAGCAACAATGATCAAGCAAAGTCATGATAAGTGGGAGGTTGGCAATTCGGAAAATCCCAACTCAATCAGAGGAAAGAGTTCACAGCGTTTGACTACTACTGTGGAGACTACTGAAAATGGATTTGGAGCGAACAAAAGCGGAGTTTCCAGTAAAGGATATGAAAAGGTCAACAACTCTGAGCTTCAGTATGTGTCTGCATTGGAGGATTCAGAAGGGGAACATGGGAGGAGCAGAGTCAATGAACCAGAATCAATTTTATCAAAGTCCGCTACTACCGGCAACAAGTACAATTCGATCAAGACAAAGTTTCTCGGTTCTGAATTGAAGTCAAATAAGAACTGTGTCGACAAGGCTTCAGAACCTGAATCAAGCAAGAACTCTCACAAGAGAGGCAAGTTTGAGTGTACCACTTGCAATAAAACCTTCCACTCATACCAAGCTCTCGGAGGCCACAGAGCTAGCCACAAGAAGATCAAGGGCTGCTTTGCTTCGAGAAATGAGAGCAGCGAAAACAGCATTGAAACTGATCTCTCTCCTGATCCAATAACAACCGAACGCAAGCTCATGAACAACACTGACCGTGAGTATCTGGGGGAACACCAACAGGGTGCTGGTTTTCATGATGAGGTGGAAAGAGTTACTGAGTCCAAGAAGAGCAAGGGGCATGAGTGCCCAATTTGCCTCAAAGTTTTTCCATCAGGCCAAGCCTTGGGTGGGCATAAGAGATCTCATATGACTGGTGGGTCTGAGAGTAGAAACTTTCAAACAGTTGTAGTTCAGGAACCAGTGGCAGAAATCAGGGACTTCCTTGATCTTAATCTCCCTGCTGCTACTGAGGAAGAAAGCAATAGTCATGCTGACTCTAACAGACCCTGGTGGGTAGTACAAGACAACCACAACCACAACCACAAGCAGGAGGCACTGGTAGGCCTGATCTTATAG 1695 0.4673 MEADQIQEFKHACKFCGKCFPCGRSLGGHMRSHITNLSSEEKEKLPARKLFSSSLNNDGDKDSEAAATNAGYGLRENPKKTWRISDHSSEDALVFDKFCKECGKAFHSWKALFGHMKCHSEKERVSNSLEDQDSWTNAKVVMDSQSDNEATAPNKRRRSKRRTRYTVASAAATSSVVSFANPSSSLSEVEQEQEEVAMSLMMLSRDVSPWSGPHSVAESSDNNSAYFEARSSARTNLVAKFDGTTNFTPNTATMIKQSHDKWEVGNSENPNSIRGKSSQRLTTTVETTENGFGANKSGVSSKGYEKVNNSELQYVSALEDSEGEHGRSRVNEPESILSKSATTGNKYNSIKTKFLGSELKSNKNCVDKASEPESSKNSHKRGKFECTTCNKTFHSYQALGGHRASHKKIKGCFASRNESSENSIETDLSPDPITTERKLMNNTDREYLGEHQQGAGFHDEVERVTESKKSKGHECPICLKVFPSGQALGGHKRSHMTGGSESRNFQTVVVQEPVAEIRDFLDLNLPAATEEESNSHADSNRPWWVVQDNHNHNHKQEALVGLIL 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04636 564 ProSitePatterns Zinc finger C2H2 type domain signature. 386 406 IPR013087 -
Viun3g04636 564 Pfam C2H2-type zinc finger 384 408 - -
Viun3g04636 564 Pfam C2H2-type zinc finger 99 121 - -
Viun3g04636 564 Pfam C2H2-type zinc finger 11 33 - -
Viun3g04636 564 Pfam C2H2-type zinc finger 473 496 - -
Viun3g04636 564 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 544 - -
Viun3g04636 564 SMART c2h2final6 97 119 IPR013087 -
Viun3g04636 564 SMART c2h2final6 473 495 IPR013087 -
Viun3g04636 564 SMART c2h2final6 11 33 IPR013087 -
Viun3g04636 564 SMART c2h2final6 384 406 IPR013087 -
Viun3g04636 564 ProSitePatterns Zinc finger C2H2 type domain signature. 13 33 IPR013087 -
Viun3g04636 564 MobiDBLite consensus disorder prediction 53 72 - -
Viun3g04636 564 MobiDBLite consensus disorder prediction 262 281 - -
Viun3g04636 564 Gene3D Classic Zinc Finger 8 119 - -
Viun3g04636 564 ProSiteProfiles Zinc finger C2H2 type domain profile. 97 124 IPR013087 -
Viun3g04636 564 ProSitePatterns Zinc finger C2H2 type domain signature. 475 495 IPR013087 -
Viun3g04636 564 ProSiteProfiles Zinc finger C2H2 type domain profile. 384 411 IPR013087 -
Viun3g04636 564 ProSiteProfiles Zinc finger C2H2 type domain profile. 11 33 IPR013087 -
Viun3g04636 564 MobiDBLite consensus disorder prediction 141 163 - -
Viun3g04636 564 ProSiteProfiles Zinc finger C2H2 type domain profile. 473 495 IPR013087 -
Viun3g04636 564 Gene3D Classic Zinc Finger 381 495 - -
Viun3g04636 564 SUPERFAMILY beta-beta-alpha zinc fingers 8 35 IPR036236 -
Viun3g04636 564 ProSitePatterns Zinc finger C2H2 type domain signature. 99 119 IPR013087 -
Viun3g04636 564 MobiDBLite consensus disorder prediction 264 281 - -
Viun3g04636 564 SUPERFAMILY beta-beta-alpha zinc fingers 98 406 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04636 Viun-Chr3 53837737 53840109 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04636 468 531 C2H2 Transcription Factor Family AT1G26610 63.077 2.78e-18 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun3g04636 zf-C2H2_6 2.1e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04636 - - gmx:102669916 868.226