Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04618 ATGTCAGAGCAGGAACCTCATTCTTGTGCCTTACTCTTGTTCTTTTTCTTGATCCTTCTTTCAGGTAAAGTTGTTGCGGGGGAATCTTTGGAAACAGACAAAGAGGTTTTGCTGAAGCTTAAATCGTACCTGGACAGCAAAATTCTTGCAGACAAAGGAGCGTACAAAGACTGGAACACCAATAGCTCCAATCCCTGTCAATGGAGTGGAATTTCATGCAGTGCTACGGGGAGGGTGGTTCGCATAGGCCTTCCTGGGAGTGACATCACCGGTGAGATATTCAAGAATTTCTCGCAGCTCACTGAACTCAGGCACCTTGATCTCTCTCAGAACACGCTCTCTGGTGAGATTCCCGAGGACTTGAGGCGCTGCTACAAGCTCGAGCATCTCAACCTATCACATAATATTCTTGAAGGGGAGCTGAACTTGACTGGATTGAGAAGCTTGCACACACTGGACTTGTCAAATAACAGATTTTTTGGGGATATTGGGTTGAATTTCCCTGCCATTTGTGACAATTTAGTCACTCTCAACGTCTCAGGTAATAACAACTTGATTGGAAGGATCGAAAACTGCTTTGACCAATGTCTCAAGTTGCAGTACTTGGATTTGAGCACCAACAGTCTGAGTGGAGGCTTGTGGATGAAGTTTGCGAGGCTCAAAATGTTTTCTGTCGCGGAGAACCATCTGAGTGGGACTATTCCTTTGGAAGCTTTGCCTTTGAATTGCAGCCTTGAAGAACTAGACCTTTCACAAAATGGATTTGTTGGTGAGGCACCTAAGGGGGTTGCTAACTGCAAGAATTTAAGCAGTCTGAATCTTTCTAGTAACAAATTTACCGGGGGTATCCCTGTTGAAATGGGATCCATTTCCCGGCTCAAAGCATTGTACTTGGGGAACAACAGCTTTTCAAGAGAGATTCCTGAGTCCCTTCTGAACCTGACCAATTTGACCTTCTTGGATTTGAGCAGAAACCGATTTGGTGGGGAAATACAAGAGATATTCGGGAAATTTAAGCAAGTGAGTTTTCTTCTGTTGCACTCAAATGACTACACTGGAGGATTGAGATCCTCAGGAATTCTCACATTGCCAAACATTTGGCGGTTAGACCTAAGCTACAACAACTTTTCAGGACCGTTACCAGTTGAGATCTCTCAAATGTCAAGTCTGAAGTTTCTAATGTTATGCTACAACCAGTTCAATGGATCAATTCCTCCGGAACTTGGAAACATGACTCAACTGCAAGCGCTCGACCTTGCCTTCAACAATTTGACTGGGTCTATACCACCAACCCTTGGAAAGTTAAACTCCCTCTTATGGTTGATGCTAGCAAACAATTCTTTAACCGGAGAAATCCCTCCAGAGTTGGGAAACTGTTCAAGCTTATTATGGCTAAATCTTGCCAACAATATGCTCTCTGGAAAATTGCCTTCTGAACTGTCCAGAATTGGAAGGAATGCCATGACCACATTTGAATCCAATAGGCGAAACTATAAAATGGTTGCTGGATCTGGTGAATGTTTGGCAATGAAGAGATGGATACCTGCAGATTATCCTCCATTCAGCTTTGTGTATGACCTCTTAACAAGGAAAAAATGCAGAGAACTTTGGGACAAATTGATCAAAGGGTATGGTGTTTTCCCGTTTTGCGCACCTGGTTCTTCCTTTCGTGTGACACAGATATCCGGGTATATTCAGCTAAGTTCGAACCAGCTCAGTGGTGAAATTCCTCCAGAGATCGGGTCAATGGTCAACTTCAGCATGATGCACTTGGGGTTCAACAATCTCTCTGGGAAGTTACCTCGAGAGATGGGAAGTATATCCATGGTGGTATTAAACATCACAAGAAACGAGTTTTCAGGCGAAATCCCCCAAGAACTTGGCAACATGAAATGTCTGATGAATCTGGATCTGTCGTACAACAATTTTTCGGGAATGTTTCCGACGAATTTGAACAAATTGACAGAGCTTAACAAGTTCAACATCTCATACAATCCCTTCATATCAGGTGAGGTCCCATCAACCGGACAGTTCGCTACCTTTGAAAAAGATTCATATTTAGGTAACCCCCTTTTGATTCTACCCAAGTTTATTCAGAACACCACGAATGACAGAAACGACACCTCTCAGAAAGAGCATAAAAAGTCCTCAAGACTACCTGTGCTTTTGGTGTCTGCGGTCATAACCCTGGTTTTCGTAGTATGCGGACTTCTCACTGTCTTAGTCTGCGTATCGGTGAAAGGCCCTTCAGAGGAACCAAGATACCTCTTGAGGGACACAAAACAGTGGCTTGATTCCAGCAGCTCCGGATCCTCACCATGGATGTCCGACACAGTGAAGGTCATCCGTTTGAACAAGACAGCTTTCACACATGCCGACATTCTGAAAGCAACGGGCAGCTTCTCGGAGGACAGAATCATAGGAAAAGGAGGGTTTGGAACAGTGTACAAGGGAGTGTTTTCAGACGGCAGACAAGTGGCGGTGAAGAAGCTCCAAAGGGAAGGCCTGGAGGGTGAGAAGGAATTCAAGGCCGAAATGGAGGTTCTGAGTGGACATGGGTTTGGTTGGCCTCATCCGAACCTGGTGACACTCTACGGGTGGTGCCTAAACGAGTCAGAAAAGATACTGATTTATGAGTACATAGAAGGTGGAAGCTTGGAGGATGTAGTGACCGACAGAACATGTTTGACATGGAGGAGGAGGTTAGAAGTGGCAATCGATGTGGCACGTGCACTGGTGTATCTACACCACGAGTGCTACCCTTCTGTTGTGCACAGAGATGTGAAGGCGAGCAATGTGTTACTAGATAAAGATGGGAAGGCGAAGGTAACTGATTTTGGGCTTGCCAGAGTGGTTGATGTTGGGGATAGCCATGTGAGCACTATGGTGGCTGGGACAGTGGGGTACGTTGCACCTGAATATGGACACACATGGCAGGCTACTACAAAAGGGGATGTGTATAGTTTTGGGGTGTTGATCATGGAGCTGGCAGCGGCAAGAAGAGCAGTGGATGGAGGGGAAGAGTGCTTGGTGGAATGGGCGAGGCGAGTTATGGGTTATGGACGACACCATCATCATCATCATCATCGTCATCATCGCTCTGTGCCAGTTCTTCTGATGGGTTCAGGGCTTGTTGGTGGGGCTGAGGAGATGACTGAGTTGCTGAGGATTGGGGTGATGTGCACAGCTGATGCACCACAGGCTAGGCCGAACATGAAAGAGGTTCTTGCTATGCTGATTAAGATATTTAACCTCAAGGACCACTCCACTTATGGATACCTTGTTTAG 3288 0.4565 MSEQEPHSCALLLFFFLILLSGKVVAGESLETDKEVLLKLKSYLDSKILADKGAYKDWNTNSSNPCQWSGISCSATGRVVRIGLPGSDITGEIFKNFSQLTELRHLDLSQNTLSGEIPEDLRRCYKLEHLNLSHNILEGELNLTGLRSLHTLDLSNNRFFGDIGLNFPAICDNLVTLNVSGNNNLIGRIENCFDQCLKLQYLDLSTNSLSGGLWMKFARLKMFSVAENHLSGTIPLEALPLNCSLEELDLSQNGFVGEAPKGVANCKNLSSLNLSSNKFTGGIPVEMGSISRLKALYLGNNSFSREIPESLLNLTNLTFLDLSRNRFGGEIQEIFGKFKQVSFLLLHSNDYTGGLRSSGILTLPNIWRLDLSYNNFSGPLPVEISQMSSLKFLMLCYNQFNGSIPPELGNMTQLQALDLAFNNLTGSIPPTLGKLNSLLWLMLANNSLTGEIPPELGNCSSLLWLNLANNMLSGKLPSELSRIGRNAMTTFESNRRNYKMVAGSGECLAMKRWIPADYPPFSFVYDLLTRKKCRELWDKLIKGYGVFPFCAPGSSFRVTQISGYIQLSSNQLSGEIPPEIGSMVNFSMMHLGFNNLSGKLPREMGSISMVVLNITRNEFSGEIPQELGNMKCLMNLDLSYNNFSGMFPTNLNKLTELNKFNISYNPFISGEVPSTGQFATFEKDSYLGNPLLILPKFIQNTTNDRNDTSQKEHKKSSRLPVLLVSAVITLVFVVCGLLTVLVCVSVKGPSEEPRYLLRDTKQWLDSSSSGSSPWMSDTVKVIRLNKTAFTHADILKATGSFSEDRIIGKGGFGTVYKGVFSDGRQVAVKKLQREGLEGEKEFKAEMEVLSGHGFGWPHPNLVTLYGWCLNESEKILIYEYIEGGSLEDVVTDRTCLTWRRRLEVAIDVARALVYLHHECYPSVVHRDVKASNVLLDKDGKAKVTDFGLARVVDVGDSHVSTMVAGTVGYVAPEYGHTWQATTKGDVYSFGVLIMELAAARRAVDGGEECLVEWARRVMGYGRHHHHHHHRHHRSVPVLLMGSGLVGGAEEMTELLRIGVMCTADAPQARPNMKEVLAMLIKIFNLKDHSTYGYLV 1095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04618 1095 CDD STKc_IRAK 807 1082 - -
Viun3g04618 1095 SMART LRR_typ_2 100 124 IPR003591 -
Viun3g04618 1095 SMART LRR_typ_2 314 337 IPR003591 -
Viun3g04618 1095 SMART LRR_typ_2 411 434 IPR003591 -
Viun3g04618 1095 SMART LRR_typ_2 435 459 IPR003591 -
Viun3g04618 1095 SMART LRR_typ_2 363 387 IPR003591 -
Viun3g04618 1095 SMART LRR_typ_2 146 177 IPR003591 -
Viun3g04618 1095 Gene3D Phosphorylase Kinase; domain 1 767 880 - -
Viun3g04618 1095 SUPERFAMILY RNI-like 73 285 - -
Viun3g04618 1095 FunFam Putative LRR receptor-like serine/threonine-protein kinase 338 499 - -
Viun3g04618 1095 ProSitePatterns Protein kinases ATP-binding region signature. 807 830 IPR017441 GO:0005524
Viun3g04618 1095 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 881 1087 - -
Viun3g04618 1095 SMART serkin_6 801 1083 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g04618 1095 SUPERFAMILY L domain-like 218 479 - -
Viun3g04618 1095 Gene3D Ribonuclease Inhibitor 32 143 IPR032675 -
Viun3g04618 1095 SUPERFAMILY Protein kinase-like (PK-like) 783 1080 IPR011009 -
Viun3g04618 1095 Pfam Leucine rich repeat 268 327 IPR001611 GO:0005515
Viun3g04618 1095 Pfam Leucine rich repeat 96 135 IPR001611 GO:0005515
Viun3g04618 1095 SUPERFAMILY L domain-like 555 679 - -
Viun3g04618 1095 FunFam Leucine-rich repeat receptor-like kinase 35 143 - -
Viun3g04618 1095 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 27 1079 - -
Viun3g04618 1095 Pfam Leucine rich repeat N-terminal domain 31 74 IPR013210 -
Viun3g04618 1095 Pfam Protein kinase domain 802 1077 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g04618 1095 ProSiteProfiles Protein kinase domain profile. 801 1091 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g04618 1095 Gene3D Ribonuclease Inhibitor 144 238 IPR032675 -
Viun3g04618 1095 FunFam Suppressor of npr1-1 constitutive 4 770 880 - -
Viun3g04618 1095 Pfam Leucine Rich repeat 147 165 IPR001611 GO:0005515
Viun3g04618 1095 Gene3D Ribonuclease Inhibitor 555 710 IPR032675 -
Viun3g04618 1095 Gene3D Ribonuclease Inhibitor 327 511 IPR032675 -
Viun3g04618 1095 Gene3D Transferase(Phosphotransferase) domain 1 881 1091 - -
Viun3g04618 1095 ProSiteProfiles Leucine-rich repeat profile. 126 147 IPR001611 GO:0005515
Viun3g04618 1095 ProSitePatterns Serine/Threonine protein kinases active-site signature. 923 935 IPR008271 GO:0004672|GO:0006468
Viun3g04618 1095 FunFam Inactive leucine-rich repeat receptor-like protein kinase 237 333 - -
Viun3g04618 1095 Gene3D Ribonuclease Inhibitor 239 326 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04618 Viun-Chr3 53713838 53717615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04618 39 1082 Receptor kinase-like Gene Family AT4G39400 33.046 3.00e-149 475
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-2 Viun3g04618 Pkinase 4.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04618 - - vum:124845100 2036.92