Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04600 ATGGATGCTGAAACTGAGACCGAGGAACTTATTAATTTGAACTACAGAGCAAGTAACTGTGGTGGGAATAATAGTAAGAGTGGCGATGGATTTATTGACAGAAGCAAAATGAGGATTTTGTTGTGTGACAACGATTCCAAGAGTTCTGAAGAGGTTTTTACTCTTCTTTTGAGGTGTTCTTATCAGGTTACTACAGTAAAATCAGCTAGGCAAGTAATTGATGCACTGAATGCGGAGGGGCAATATATAGACATGATACTGGTTGAAGTTGACCTTCCGGTGAAGAAAGGCATGAAGTTGTTGAAGTACATAGCAAGGGATAAAGAATTATGCCGAATCCCTGTTATAATGATGTCTGCACAAGATGAGGTATCCATTGTTGTAAAGTGCTTGAGGCTTGGAGCAGCAGATTACCTAGTAAAGCCTTTACGCACAAATGAACTATTAAATTTGTGGACACACATGTGGAGAAGGAGACGCATGCTTGGACTTGTGGAGAACAACATCTTGAATTATGAGTTTGAACTGGTAGCATCAGATCCAAGTGATGCCAATACAAACAGTACCACTTTGTTCTCTGATGACACAGATGACAAGTCCAAAAGAAGCACTAATCCAGAGACCGTAGTATCAATCCAACAAGAACAAGAGGTCAGTATTGCCGCCATCACCAATGTTGTGGTGGAGCTTCCCAGTCCTGATGTGCCTGGAATAAGTGATCGCCGAACAGGTACTCCAATACAGCATCCATCATGCAGCAGAATTAATACTGGACATTTTTCATCTGGTCCAAAGAAGAGTGAACTGAAGATTGGAGAGTCATCAGCCTTTTTCACCTATGTTAAAGCAACAGCACTGAAGAGCAACATTGAAGAGACTGCTCGTGTTGAAAATACTACTACTGAAGTTAGGGTGGAACATGTGAATCAAGCATGTGGTGAACAGGAGGGTAATGACCTTAATACACATGAAAATGGAGAAATGTTTGAACATCATTCACAAGATGACTTACCCAGCAGCAGCAGTATCCCTGATTCTTTTTCTATTGAGAGATCTTGTACTCCACCTGCATCTATGGAAGTTTCTCAGCAAAAGCATTACAGGGAAGAACATTCTCGGGGAGTAGTGCATCCAATAAATGGAAGTCATGGTTCCGATCCTGCTCAGCATGCTTATCCATATTATATTTCAAGAGTTGTTAATCATGTTATGATGCCATCATCAGCACAAATGTATCAAAAGAATATCCAGGACCTGCAAAGTCATTCTGCACAGTACAATCGTCTTCCCCAATGTCCTCCTCATGCAAGTGGGATGACATCCTTCCCATATTATCCAATGAGCATTTGCTTACAACCTGGTCAGATTTCTACAACTCATTCTTGGCCATCATTAGGAAGTTCAAGTTCATGTGAAGTGAAATCAAGCAAGGTTGATAGGAGAGAAGCAGCACTGATGAAATTTAGACAGAAAAGGAAAGAACGCTGTTTTGATAAGAAAATTAGGTATGTCAACAGAAAACGGCTTGCAGAAAGGCGGCCTCGTGTGAGGGGACAGTTTGTCAGAAAGTTGAATGGTGTTAATGTGGATCTTAATGGACAACCTACTTCCACTGATTATGATGAAGAAGATGATGAAGAGGAGGAAGACAACCATGTAGCAAGAGATTTCTCTCCTCAGGATGCTTGA 1689 0.4109 MDAETETEELINLNYRASNCGGNNSKSGDGFIDRSKMRILLCDNDSKSSEEVFTLLLRCSYQVTTVKSARQVIDALNAEGQYIDMILVEVDLPVKKGMKLLKYIARDKELCRIPVIMMSAQDEVSIVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLVENNILNYEFELVASDPSDANTNSTTLFSDDTDDKSKRSTNPETVVSIQQEQEVSIAAITNVVVELPSPDVPGISDRRTGTPIQHPSCSRINTGHFSSGPKKSELKIGESSAFFTYVKATALKSNIEETARVENTTTEVRVEHVNQACGEQEGNDLNTHENGEMFEHHSQDDLPSSSSIPDSFSIERSCTPPASMEVSQQKHYREEHSRGVVHPINGSHGSDPAQHAYPYYISRVVNHVMMPSSAQMYQKNIQDLQSHSAQYNRLPQCPPHASGMTSFPYYPMSICLQPGQISTTHSWPSLGSSSSCEVKSSKVDRREAALMKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKLNGVNVDLNGQPTSTDYDEEDDEEEEDNHVARDFSPQDA 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04600 562 ProSiteProfiles CCT domain profile. 481 523 IPR010402 GO:0005515
Viun3g04600 562 ProSiteProfiles Response regulatory domain profile. 38 156 IPR001789 GO:0000160
Viun3g04600 562 PANTHER TWO-COMPONENT RESPONSE REGULATOR 37 241 IPR045279 GO:0009736
Viun3g04600 562 MobiDBLite consensus disorder prediction 525 562 - -
Viun3g04600 562 Gene3D - 36 229 - -
Viun3g04600 562 MobiDBLite consensus disorder prediction 330 357 - -
Viun3g04600 562 MobiDBLite consensus disorder prediction 185 209 - -
Viun3g04600 562 Pfam Response regulator receiver domain 39 150 IPR001789 GO:0000160
Viun3g04600 562 MobiDBLite consensus disorder prediction 335 357 - -
Viun3g04600 562 Pfam CCT motif 481 523 IPR010402 GO:0005515
Viun3g04600 562 SMART REC_2 37 152 IPR001789 GO:0000160
Viun3g04600 562 MobiDBLite consensus disorder prediction 537 551 - -
Viun3g04600 562 SUPERFAMILY CheY-like 35 163 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04600 Viun-Chr3 53576467 53581722 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04600 26 561 Response Regulator Gene Family AT5G61380 50.560 0.0 522
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Viun3g04600 Response_reg 1.3e-17 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04600 K12127 - gmx:100786522 946.036