Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04581 ATGGATTCTCAGCCTCTTATGAGTTGGAGCTCTTATTATCAGATAGAAGAAAATCCACTTCCATTTACGTGTCAGTTTTCTTACAGCGAAAACAGCGAAGTGTATCCTCCTCCTCCACTACACGATTTACCCATACAAGACTACCCCGTTGATGCCGTTCCTCTTATGGAGTTCTACCCTTCGGATCCTTTATACGAAACACTCGCCATCGAACCCACACCAACCCTGCGAGCAGACTGTGATTTTTATGATATCGATAAGGGGCTTTCGGTTTGGAAAGAAGTGAACGCTGTGTTTGATTCGGAAGTCGATATTTTATTTCGTAAGAAGGATGAAAGTGGAGGAAGTTTGAAGGAGATGATGGTGGATGGTGGGAATGTTAACGAAGAGAGAGAAGAGAGAAGGAACCCTAGCAATGGCAGAAAGTTATCTCGGAAGACCATATCTGAGTACTTTTACATGCCAATAACACAAGCGGCCAGAGAACTTAATGTCGGGCTGACACTTTTGAAGAAAAGGTGCAGAGAGTTGGGTATCAGAAGATGGCCCCACAGAAAGCTGATGAGCTTGCAAACTCTGATAAATAATGTACAGGAGCTACTGAAAGAGGAGGGGCCGGAGAGTGAAGAGAAGTTAAGATTTGCCATTGAGACATTGGAAAATGAGAAGAAACTTTTGGAGGAAATGCCAGATATTGAACTGGAAGATAATACAAAAAGACTTAGACAGGCATGTTTCAAGGCCAACTACAAGAAAAGGAAGCTAGGGCAGAGGGAACCACAGTGTTCTTCTTGGAGTGGCGCCATGTCAGAATATAATAACGAAAGTGAAGAAGAACTGGATATAAAGTATCTCATTTCTCAGTTAGCTTAA 873 0.4261 MDSQPLMSWSSYYQIEENPLPFTCQFSYSENSEVYPPPPLHDLPIQDYPVDAVPLMEFYPSDPLYETLAIEPTPTLRADCDFYDIDKGLSVWKEVNAVFDSEVDILFRKKDESGGSLKEMMVDGGNVNEEREERRNPSNGRKLSRKTISEYFYMPITQAARELNVGLTLLKKRCRELGIRRWPHRKLMSLQTLINNVQELLKEEGPESEEKLRFAIETLENEKKLLEEMPDIELEDNTKRLRQACFKANYKKRKLGQREPQCSSWSGAMSEYNNESEEELDIKYLISQLA 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04581 290 PANTHER PROTEIN RKD4 131 264 IPR044607 GO:0003700
Viun3g04581 290 ProSiteProfiles RWP-RK domain profile. 126 210 IPR003035 -
Viun3g04581 290 Pfam RWP-RK domain 143 190 IPR003035 -
Viun3g04581 290 Coils Coil 209 229 - -
Viun3g04581 290 MobiDBLite consensus disorder prediction 117 141 - -
Viun3g04581 290 MobiDBLite consensus disorder prediction 124 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04581 Viun-Chr3 53438772 53439961 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04581 138 260 AtRKD Transcription Factor Family AT1G18790 70.968 2.77e-55 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Viun3g04581 RWP-RK 1.5e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04581 - - gmx:100788666 377.481
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04581 3 53438772 53439961 Viun3g04581 3 53438772 53439961 ECH