Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04578 ATGAAAAAGAGGCAGGTGGTGGTGAAGAGAGAATACGCCGCATCTTCTGCGGTGGGGAATATTCGATACGGAGAGTGCCAGAAGAATCATGCAGCCAACACCGGAGGTTACGCGGTCGATGGTTGCAGGGAATTCATGGCCAGTGCCGGTGAGGGAACCAGTGCGGCGCTTACCTGTGCGGCTTGCGGCTGCCACAGGAACTTTCACAAGAAGGAAGTACTGCACGGCGTCAACTGA 237 0.557 MKKRQVVVKREYAASSAVGNIRYGECQKNHAANTGGYAVDGCREFMASAGEGTSAALTCAACGCHRNFHKKEVLHGVN 78
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04578 78 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 16 73 - -
Viun3g04578 78 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 22 73 IPR006456 -
Viun3g04578 78 Pfam ZF-HD protein dimerisation region 21 73 IPR006456 -
Viun3g04578 78 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 23 72 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04578 Viun-Chr3 53404112 53405035 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04578 1 73 Zinc finger-homeobox gene family AT3G28917 61.905 1.10e-30 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Viun3g04578 ZF-HD_dimer 1.7e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04578 - - gmx:100797273 156.377