Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04577 ATGAACATGGGGAGGCCACCTTGCTGTGAAAAAATTGGAGTTAAGAAAGGACCTTGGACTCCAGAGGAAGATATCATGTTGGTGTCTTACATTCAAGAACATGGACCAGGAAATTGGAGATCAGTTCCCACTAACACAGGTTTGATGAGATGCAGCAAGAGCTGCAGGCTTAGATGGACTAATTATCTTCGACCTGGTATCAAACGAGGGAATTTCACCGAGCATGAGGAGAAGATCATAATCCACCTTCAAGCCCTTTTGGGAAACAGATGGGCTGCTATAGCTTCGTATCTTCCAGAAAGGACAGACAATGACATAAAAAATTATTGGAATACCCATCTGAAGAAGAAGATGAAACCAAGTGATCAAAACGAAGAGGGCATGGAACAAGAGGGACATTCTTCTTCTTCTTCACATCCAAAGGGTCAGTGGGAGAGAAGATTACAAACAGATATACAAACGGCAAAACAAGCCTTGTGTGATGCTTTGTCCCTCCACACGACACCACCAACACATGTTGTTCCTGAGACAAAGCCTTCAACTTCTCATCAACCCTACAGCCATGCCTCATCTTCATACGCATCAAGCTATGAAAACATCTCCCGGTTGATGGAAAACTGGATGAAAACCCCAAACTCACACGACACAAATTCGGTAGGGGATTATTCCTTCAACAACATGGTCAATATTAATACACCGAGATCCAGTTCTAGTGAGGGAGCACATAGCACCACTAATACCACGTGTGCACAAGATCATGTTTTTGACTTGTTCACCTTCAACTCCTCCACAAACTATGGTGCTCCCTCTCAGACCCAAGCGCCTCTTACGATGATAGAGGATTGGCTTTTCGAGGACGGGGCTTCTCAGTCTCACGAAGATCTGATGAGCATGTCGCTGGAAGAAAGTACTTCGGGTTTGTTTTAG 927 0.4444 MNMGRPPCCEKIGVKKGPWTPEEDIMLVSYIQEHGPGNWRSVPTNTGLMRCSKSCRLRWTNYLRPGIKRGNFTEHEEKIIIHLQALLGNRWAAIASYLPERTDNDIKNYWNTHLKKKMKPSDQNEEGMEQEGHSSSSSHPKGQWERRLQTDIQTAKQALCDALSLHTTPPTHVVPETKPSTSHQPYSHASSSYASSYENISRLMENWMKTPNSHDTNSVGDYSFNNMVNINTPRSSSSEGAHSTTNTTCAQDHVFDLFTFNSSTNYGAPSQTQAPLTMIEDWLFEDGASQSHEDLMSMSLEESTSGLF 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04577 308 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
Viun3g04577 308 SMART sant 68 116 IPR001005 -
Viun3g04577 308 SMART sant 15 65 IPR001005 -
Viun3g04577 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 67 IPR017930 -
Viun3g04577 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 118 IPR017930 -
Viun3g04577 308 MobiDBLite consensus disorder prediction 130 146 - -
Viun3g04577 308 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Viun3g04577 308 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 3 235 - -
Viun3g04577 308 MobiDBLite consensus disorder prediction 170 190 - -
Viun3g04577 308 CDD SANT 71 114 IPR001005 -
Viun3g04577 308 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Viun3g04577 308 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Viun3g04577 308 CDD SANT 18 63 IPR001005 -
Viun3g04577 308 MobiDBLite consensus disorder prediction 117 146 - -
Viun3g04577 308 MobiDBLite consensus disorder prediction 167 190 - -
Viun3g04577 308 Gene3D - 70 149 - -
Viun3g04577 308 Gene3D - 15 68 - -
Viun3g04577 308 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Viun3g04577 308 FunFam MYB-related transcription factor 15 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04577 Viun-Chr3 53378284 53380102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04577 3 308 MYB Transcription Factor Family AT5G62470 49.189 5.03e-102 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun3g04577 Myb_DNA-binding 1.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04577 K09422 - gmx:100812460 467.618