Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04570 ATGGAGGGAGGCGACGATCTCCACCATCATCACCACCACCACCGTCAGAACTTCCCATTCCAGCTCCTGGAGAAGAAAGAGGACCAAGAAGCGGCCTCATGCTCCACCTCCTCCCCCTACCCTTCACTAGCAATCTCCGCGGAACCCAGCACGTCCAATTCCACCCGATCCAACCAGCTCGCGGCGCCGTCCGAGCCTCCAAACAGCAAAAAGCCGCCGCCCAAACGCACGTCGACGAAGGACCGGCACACGAAGGTGGACGGTCGTGGCCGCCGCATCCGAATGCCCGCTCTCTGCGCCGCCCGCGTCTTCCAACTCACGCGCGAACTCGGTCACAAGTCCGATGGCGAAACCATCGAGTGGCTCCTCCAGCAGGCCGAGCCCGCCGTCATCGCCGCCACCGGGACCGGAACCATCCCCGCCAACTTCACCTCTCTCAACATCTCCCTCCGCAGCTCCGGCTCCTCCATGTCCGTCCCCTCCCAGCTCCGGTCCTCCTACTTCAACCCCAACTTCTCCCTCCAACAACGGCGCACCTTGTTCCCCGGCATCGCCTTATCCTCCGACAACAACCCCACCAACACCTCCACACTCCTCAATTTCCAATCCAACAACCTGAACACATCCATGCTCCAGGCGAAGCCCGAAGCCCCCTCCTCCACCTTGGATTTGTCCGACACAAGCGCGGAGGAATCAACCCTAGGCCGAAAAAGAAGACCAACGGAACAAGACCTCTCCTCCTCCTCGCAGCACCAAATGGGGAGTTATCTCCTCCAGTCGAGTGCAGGCACGATTCCCGCGAGCCACGCCGCCAACATATGGATGGTGGCCAATTCAAACACCAATCAAGTGATGAGTGGCGATCCCATATGGACCTTCCCCCCGGTTAACAACAGTGCCTTGTATCGAGGCACCATGTCTAGTGGGTTGCATTTCATGAACTTCCCCACGCCCATGGCACTGTTGCCGAGTCAGCAACTGGGCTCTTCTGGGATTGGCGCTGTCGGGGGAAGCAGTAATAATAACAGTAATAACAACGGCAATAATAATATGAACGAAGGGCATTTGAGTATGCTTGCGGGGCTTAGTCCTTATCGTCCGGTTATCGGCGTTTCCGAATCTCAGGCGAGCGGCTCGCAATCGCATCGTGGAGGTGCCGCCGATGATCGCCATGATACCTCCAGTCACCACTCCTAG 1197 0.5856 MEGGDDLHHHHHHHRQNFPFQLLEKKEDQEAASCSTSSPYPSLAISAEPSTSNSTRSNQLAAPSEPPNSKKPPPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSMSVPSQLRSSYFNPNFSLQQRRTLFPGIALSSDNNPTNTSTLLNFQSNNLNTSMLQAKPEAPSSTLDLSDTSAEESTLGRKRRPTEQDLSSSSQHQMGSYLLQSSAGTIPASHAANIWMVANSNTNQVMSGDPIWTFPPVNNSALYRGTMSSGLHFMNFPTPMALLPSQQLGSSGIGAVGGSSNNNSNNNGNNNMNEGHLSMLAGLSPYRPVIGVSESQASGSQSHRGGAADDRHDTSSHHS 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04570 398 MobiDBLite consensus disorder prediction 213 252 - -
Viun3g04570 398 MobiDBLite consensus disorder prediction 17 31 - -
Viun3g04570 398 MobiDBLite consensus disorder prediction 230 244 - -
Viun3g04570 398 MobiDBLite consensus disorder prediction 32 65 - -
Viun3g04570 398 MobiDBLite consensus disorder prediction 384 398 - -
Viun3g04570 398 Pfam TCP family transcription factor 77 245 IPR017887 -
Viun3g04570 398 MobiDBLite consensus disorder prediction 371 398 - -
Viun3g04570 398 MobiDBLite consensus disorder prediction 1 92 - -
Viun3g04570 398 MobiDBLite consensus disorder prediction 213 229 - -
Viun3g04570 398 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 28 351 IPR005333 GO:0003700
Viun3g04570 398 MobiDBLite consensus disorder prediction 333 356 - -
Viun3g04570 398 ProSiteProfiles TCP domain profile. 79 133 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04570 Viun-Chr3 53324972 53328056 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04570 69 392 TCP Transcription Factor Family AT3G47620 44.893 5.16e-66 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Viun3g04570 TCP 3.6e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04570 - - gmx:100790785 594.734