Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04563 ATGGGAAATTTCTGTGCTCGCTGCAAGAATGATGGCAATTTGAATCCCCACACATGTTCTGAAGTTCCCAGTAGAGGCACCCAGTTGTTCGTTCATTCAAATCCAAACGGGTATGGACACGTTGAGGGAGGGAAACCTGAGATTCTTCCTACTCCAAGATCTGTAGGGGACATACTTTCATCCCCACATTTAAAACCCTTCACATTATGTGATCTTAAGAAGGCCACAAGAAATTTTGAGCCTTATAATCTTATTGGAGAAGGAGGATTTGGAAATGTTTACAAGGGGAGGATTAATGAAACTAAATCCTTCGGGGGTACAATTTCTGGATCTGGAACAGATGTAGCTGTTAAGAGGCTTAAGCCTGATGGCTTTCAAGGGCACAAGGAGTGGCTGTCTGAAGTCAATCATCTTGGCCAACTTCACCACCAGAATCTCGTCAAACTTATTGGATACTGCGTGGAAGGAGAGAACCGACTTCTAGTGTATGAGTACATGCCCAACGGAAGCTTGGAAGATCATATATTTCGCAAGGGCAGAAAACCACTTCCCTGGGCTACAAGAATCAAGATTGCTACGGGTGCTGCTCGAGGTCTTTCCTTCCTACATGACTCTAAGCAACAAATTATCTACCGTGATTTCAAGGCTTCTAACATTTTGATAGATTCAGAATTTAATGCAAAACTGTCAGACTTTGGATTGGCCAAAGCAGGGCCCACTGGTGATCATTCTTATGTCTCCACTCAAGTTCTGGGCACTCACGGCTATGCTGCTCCTGAATACATTGCTACAGGTCGGTTGACATCAAGGTGTGATGTGTATAGCTTTGGGGTTGTGCTATTGGAAATATTATCAGGACGGCATGCTATTGATAACACAAAATCTGGAGTGGAGCGTAATCTGGTAGAATGGGCAAGACCCTATTTGGGTGATAGGAGGAAGTTGTTCCGGATTATGGATACCAGATTAGAAGGGCAATACCCGCAGAAGGCAGCTTATACAGTTGCAATAATTGCGTTACAGTGTATTTCTGATGCCAAGAGTAGGCCACAAATGTCCGAGGTTTTGTCTGCTTTAGAACACCTTCCATCCACTAGACGTTCAGCTAGCCCCACACAAACCCATACATAG 1131 0.4421 MGNFCARCKNDGNLNPHTCSEVPSRGTQLFVHSNPNGYGHVEGGKPEILPTPRSVGDILSSPHLKPFTLCDLKKATRNFEPYNLIGEGGFGNVYKGRINETKSFGGTISGSGTDVAVKRLKPDGFQGHKEWLSEVNHLGQLHHQNLVKLIGYCVEGENRLLVYEYMPNGSLEDHIFRKGRKPLPWATRIKIATGAARGLSFLHDSKQQIIYRDFKASNILIDSEFNAKLSDFGLAKAGPTGDHSYVSTQVLGTHGYAAPEYIATGRLTSRCDVYSFGVVLLEILSGRHAIDNTKSGVERNLVEWARPYLGDRRKLFRIMDTRLEGQYPQKAAYTVAIIALQCISDAKSRPQMSEVLSALEHLPSTRRSASPTQTHT 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04563 376 SUPERFAMILY Protein kinase-like (PK-like) 56 360 IPR011009 -
Viun3g04563 376 Gene3D Phosphorylase Kinase; domain 1 53 165 - -
Viun3g04563 376 ProSiteProfiles Protein kinase domain profile. 79 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g04563 376 PANTHER OS01G0588500 PROTEIN-RELATED 57 362 - -
Viun3g04563 376 ProSitePatterns Serine/Threonine protein kinases active-site signature. 209 221 IPR008271 GO:0004672|GO:0006468
Viun3g04563 376 FunFam Serine/threonine-protein kinase BIK1 50 165 - -
Viun3g04563 376 Gene3D Transferase(Phosphotransferase) domain 1 166 375 - -
Viun3g04563 376 FunFam Serine/threonine-protein kinase PBS1 166 376 - -
Viun3g04563 376 ProSitePatterns Protein kinases ATP-binding region signature. 85 118 IPR017441 GO:0005524
Viun3g04563 376 Pfam Protein tyrosine and serine/threonine kinase 83 358 IPR001245 GO:0004672|GO:0006468
Viun3g04563 376 CDD STKc_IRAK 85 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04563 Viun-Chr3 53260475 53263591 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04563 67 362 Glycoside Hydrolase AT3G07070 52.333 7.87e-102 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Viun3g04563 PK_Tyr_Ser-Thr 1.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04563 - - gmx:100791844 606.29