Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04561 ATGTTTCGGAGTGCCCTGAGTATAAGTGATTTTGGTAGTAATTTCCTTGCTGGTTTGGCCGTGAATGTACTGGGATCTGAATCAAAACCTGGAAGGAACAATTTTATTGAACCTGCTTTCTCTTCGAAACTCCCCATTTATTATTTACAAACAAACTGCACAGGAACAGAGAACTCTGGATTCTCCTTTCCCTCGCTGACAGGAGCAAACAATGAGATTAAATGTGCTCTGGCTAAAAATTTATGGCGTAATAGTTCTACTGAGATCAACAGTGAGCTATACAAAGGTTATCAAAGAGGTAACTCAGAGGGACAAATCAATGAGATAGTTTCAGCTTTTGATTTTCTAAATTCAAATGGTAATAGATATAATGTTGGTATATGGTACAACTCAACCTACTATCAAGAAGACACAGGAATTAGTGCCAATGCATTGTTGCGGATTCCTCGCTCTGTAAATCTGATTTCCAATTCCTACCTGCAGTTTCTGCTTGGACCCGGAACCAAAATAATTTTTGAGTTTGTAAAGGAAATGCCAAAACCTGAGACCATTTTTAGGCTTGACATATCTTCTATCGTGGGCTCTCTGTTCTTTACATGGGTCATCTTGCAACTTTTTCCTGTTATTTTGACATCATTAGTATATGAGAAGCAACAAAAATTACGAATCATGATGAAAATGCATGGTCTTGGTGATAGGCCATACTGGATGATTTCATATGGTTATTTTCTTGTCATATCAGTAATTTACATGTTGTGCTTTGTGATATTTGGCTCACTCTTAGGATTAAAAATCTTCACAGTCAATGACTACAGCATCCAATTTGTATTTTATTTTATCTATATAAACTTACAAATTGCGCTAGCATTTTTGGTGGCTACCATGTTTTCAAATGTCAAGACTGCAACAGTAACTGCATATATAGGTGTCTTTGGAACCGGGTTATTAGGTGGCTTTCTTTTCCGATTCTTTGTTCAAAATACATCATTTCCAAGAGGGTGGATAATTCTTATGGAGTTGTATCCTGGGTTTGCTTTATACCGAGGGTTATATGAGTTAGCACAATTTTCCATTCAAGGGAATAGAAGGGGGACTGATGGTATGAAGTGGCATAGTCTGAGTGAAAGCACTAATGGCATGAAAGAGGTCTTAATTATCATGTTTGCTGAGTGGATTGTGATACTTTTTGCTGCCTTCTACATTGATCAAGTTTTGTCATCAGGAAGTAGAAAATGTCCTCTTTTCTTATTGAAAGGATTTCAGAAAAAGTCTCCTTTCCAAAAGCTTGACACCCAAATGGAGGTGTCAAAAGAATTCTCTCAAATGGAGAAACCTGATGTCATCCAAGAGAAGGAGAAGGTGGAGGAGCTGCTACTTGAACCAACTATTAATCATGCAATTTTATGTGACGATCTAAGAAAAGTCTATCCAGGGAGGGATGGAAATCCAGATAAATTTGCAGTAAGAGGGTTGTTCCTTTCTGTGCCTCATGGGGAATGCTTTGGTATGCTCGGTCCCAATGGAGCTGGGAAGACCTCTTTTATCAATATGATGATTGGTCTCACAAAACCAACCTCTGGTAGGGCATTTGTTCAAGGCTTGGACATAAGAACTCAAATGGGTGGAATATATACTACCATGGGTGTATGTCCACAACATGACTTGCTGTGGGACAGCTTGACAGGTAGAGAGCACCTACTTTTTTATGGCAGACTAAAAAATCTTAGAGGCTCAGTCCTGACGCAAGCAGTAGAGGACTCTTTGAAGGGTTTAAACCTTTTTCACGGAGGAGTTGCTGATAAACAAGTTGGAAAGTACAGTGGAGGGATGAAGAGGAGGCTTAGTGTTGCAATTTCATTGATTGGGGATCCCAAAGTTGTTTACATGGATGAACCAAGTTCCGGATTAGACCCTGCCTCAAGAAAAAGCTTATGGAATGTCGTCAAGCATGCAAAACAGAACCGTGCAATCATTCTCACCACACATTCCATGGAAGAGGCAGAGGCCTTATGTGATCGATTGGGCATTTTTGTCAATGGCAGCTTGCAGTGTGTAGGAAATGCAAAAGAGCTTAAAGCAAGGTATGGAGGAACCTACGTGTTGACAGTGACAACATCTTCAGAGCATGAAAAAGATGTGGAGAACATGGTGCAGAAACTCACCCCAAATGCCAACAAGATATACCATCTGTCGGGTACTCAGAAGTTTGAGCTGCCAAAAGAGGATGTAAGAATATCAGATGTGTTCCAAGCTGTTGATGTTGCAAAGAGAAAGTTCAGTGTTTGTGCATGGGGTTTAGTTGACACCACATTGGAAGATGTATTCATTAAGGTAGCACGTGAGGCTCAGGCATTTGATACCTTATCATAA 2370 0.3979 MFRSALSISDFGSNFLAGLAVNVLGSESKPGRNNFIEPAFSSKLPIYYLQTNCTGTENSGFSFPSLTGANNEIKCALAKNLWRNSSTEINSELYKGYQRGNSEGQINEIVSAFDFLNSNGNRYNVGIWYNSTYYQEDTGISANALLRIPRSVNLISNSYLQFLLGPGTKIIFEFVKEMPKPETIFRLDISSIVGSLFFTWVILQLFPVILTSLVYEKQQKLRIMMKMHGLGDRPYWMISYGYFLVISVIYMLCFVIFGSLLGLKIFTVNDYSIQFVFYFIYINLQIALAFLVATMFSNVKTATVTAYIGVFGTGLLGGFLFRFFVQNTSFPRGWIILMELYPGFALYRGLYELAQFSIQGNRRGTDGMKWHSLSESTNGMKEVLIIMFAEWIVILFAAFYIDQVLSSGSRKCPLFLLKGFQKKSPFQKLDTQMEVSKEFSQMEKPDVIQEKEKVEELLLEPTINHAILCDDLRKVYPGRDGNPDKFAVRGLFLSVPHGECFGMLGPNGAGKTSFINMMIGLTKPTSGRAFVQGLDIRTQMGGIYTTMGVCPQHDLLWDSLTGREHLLFYGRLKNLRGSVLTQAVEDSLKGLNLFHGGVADKQVGKYSGGMKRRLSVAISLIGDPKVVYMDEPSSGLDPASRKSLWNVVKHAKQNRAIILTTHSMEEAEALCDRLGIFVNGSLQCVGNAKELKARYGGTYVLTVTTSSEHEKDVENMVQKLTPNANKIYHLSGTQKFELPKEDVRISDVFQAVDVAKRKFSVCAWGLVDTTLEDVFIKVAREAQAFDTLS 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04561 789 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 466 695 IPR027417 -
Viun3g04561 789 ProSitePatterns ABC transporters family signature. 606 620 IPR017871 GO:0005524|GO:0016887
Viun3g04561 789 Pfam ABC transporter 492 633 IPR003439 GO:0005524
Viun3g04561 789 Pfam ABC-2 family transporter protein 102 400 IPR013525 GO:0016020|GO:0140359
Viun3g04561 789 SMART AAA_5 497 681 IPR003593 GO:0016887
Viun3g04561 789 FunFam ABC transporter A family member 7 456 732 - -
Viun3g04561 789 Gene3D - 459 734 IPR027417 -
Viun3g04561 789 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 467 704 IPR003439 GO:0005524
Viun3g04561 789 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 442 783 IPR026082 GO:0016020|GO:0055085|GO:0140359
Viun3g04561 789 CDD ABC_subfamily_A 471 692 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04561 Viun-Chr3 53236190 53252748 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04561 476 715 Calmodulin-binding Proteins AT2G36910 24.291 5.15e-14 74.3