Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04560 ATGGCAAATTCTGCTTCTGCTAGCTTCTCCACTCAAGCAAACGCGCTTCTTCTCAAGAACATTACCTTTCAGAAACGGAATGTGAAAACCAACCTTCGGCTGATTCTGGTCCCGGTGGTGCTATGCTTGTTGCTTTTCCTGCTCCAACTCTTATTCGACACGCAATTGAATAAAAGCAAATTCAAATGCGGCTGCGTGTGTGCCGACAACAGAACCAAAATCTCTCAGTGCCCTGAGTCAGAGAAGCGGTGCGGGGTCCAGTATTCCGATTTCTTTCAAGCCGCCATGTGCGCCATTCCCAACCCCGTCGAATGGCCACCGCTCTTGCAACTTCCTGCTCCCCCGAACCGGGCTGTGCGAACCGGTTTTCTTCCCTTTTTCGATTTGCCCGATGCATCGTGCAGGAGAACCGACTCGTGTCCTCTTTCTCTGCTCTTCACCGGAGAGAATCACTCCTTTGCGCTGAGCGTATCTGAGAACATGTTTCGGAGTGCCCTGAGTATAAGTGATTTTGGTAGTAATTTCCTTGCTGGTTTGGCCGTGAATGTACTGGGATCTGAATCAAAACCTGGAAGGAACAATTTTATTGAACCTGCTTTCTCTTCGAAACTCCCCATTTATTATTTACAAACAAACTGCACAGGAACAGAGAACTCTGGATTCTCCTTTCCCTCGCTGACAGGAGCAAACAATGAGATTAAATGTGCTCTGGCTAAAAATTTATGGCGTAATAGTTCTACTGAGATCAACAGTGAGCTATACAAAGGTTATCAAAGAGGTAACTCAGAGGGACAAATCAATGAGATAGTTTCAGCTTTTGATTTTCTAAATTCAAATGGTAATAGATATAATGTTGGTATATGGTACAACTCAACCTACTATCAAGAAGACACAGGAATTAGTGCCAATGCATTGTTGCGGATTCCTCGCTCTGTAAATCTGATTTCCAATTCCTACCTGCAGTTTCTGCTTGGACCCGGAACCAAAATAATTTTTGAGTTTGTAAAGGAAATGCCAAAACCTGAGACCATTTTTAGGCTTGACATATCTTCTATCGTGGGCTCTCTGTTCTTTACATGGGTCATCTTGCAACTTTTTCCTGTTATTTTGACATCATTAGTATATGAGAAGCAACAAAAATTACGAATCATGATGAAAATGCATGGTCTTGGTGATAGGCCATACTGGATGATTTCATATGGTTATTTTCTTGTCATATCAGTAATTTACATGTTGTGCTTTGTGATATTTGGCTCACTCTTAGGATTAAAAATCTTCACAGTCAATGACTACAGCATCCAATTTGTATTTTATTTTATCTATATAAACTTACAAATTGCGCTAGCATTTTTGGTGGCTACCATGTTTTCAAATGTCAAGACTGCAACAGTAACTGCATATATAGGTGTCTTTGGAACCGGGTTATTAGGTGGCTTTCTTTTCCGATTCTTTGTTCAAAATACATCATTTCCAAGAGGGTGGATAATTCTTATGGAGTTGTATCCTGGGTTTGCTTTATACCGAGGGTTATATGAGTTAGCACAATTTTCCATTCAAGGGAATAGAAGGGGGACTGATGGTATGAAGTGGCATAGTCTGAGTGAAAGCACTAATGGCATGAAAGAGGTCTTAATTATCATGTTTGCTGAGTGGATTGTGATACTTTTTGCTGCCTTCTACATTGATCAAGTTTTGTCATCAGGAAGTAGAAAATGTCCTCTTTTCTTATTGAAAGGATTTCAGAAAAAGTCTCCTTTCCAAAAGCTTGACACCCAAATGGAGGTGTCAAAAGAATTCTCTCAAATGGAGAAACCTGATGTCATCCAAGAGAAGGAGAAGGTGGAGGAGCTGCTACTTGAACCAACTATTAATCATGCAATTTTATGTGACGATCTAAGAAAAGTCTATCCAGGGAGGGATGGAAATCCAGATAAATTTGCAGTAAGAGGGTTGTTCCTTTCTGTGCCTCATGGGGAATGCTTTGGTATGCTCGGTCCCAATGGAGCTGGGAAGACCTCTTTTATCAATATGATGATTGGTCTCACAAAACCAACCTCTGGTAGGGCATTTGTTCAAGGCTTGGACATAAGAACTCAAATGGGTGGAATATATACTACCATGGGTGTATGTCCACAACATGACTTGCTGTGGGACAGCTTGACAGGTAGAGAGCACCTACTTTTTTATGGCAGACTAAAAAATCTTAGAGGCTCAGTCCTGACGCAAGCAGTAGAGGACTCTTTGAAGGGTTTAAACCTTTTTCACGGAGGAGTTGCTGATAAACAAGTTGGAAAGTACAGTGGAGGGATGAAGAGGAGGCTTAGTGTTGCAATTTCATTGATTGGGGATCCCAAAGTTGTTTACATGGATGAACCAAGTTCCGGATTAGACCCTGCCTCAAGAAAAAGCTTATGGAATGTCGTCAAGCATGCAAAACAGAACCGTGCAATCATTCTCACCACACATTCCATGGAAGAGGCAGAGGCCTTATGTGATCGATTGGGCATTTTTGTCAATGGCAGCTTGCAGTGTGTAGGAAATGCAAAAGAGCTTAAAGCAAGGTATGGAGGAACCTACGTGTTGACAGTGACAACATCTTCAGAGCATGAAAAAGATGTGGAGAACATGGTGCAGAAACTCACCCCAAATGCCAACAAGATATACCATCTGTCGGGTACTCAGAAGTTTGAGCTGCCAAAAGAGGATGTAAGAATATCAGATGTGTTCCAAGCTGTTGATGTTGCAAAGAGAAAGTTCAGTGTTTGTGCATGGGGTTTAGTTGACACCACATTGGAAGATGTATTCATTAAGGTAGCACGTGAGGCTCAGGCATTTGATACCTTATCATAA 2850 0.4175 MANSASASFSTQANALLLKNITFQKRNVKTNLRLILVPVVLCLLLFLLQLLFDTQLNKSKFKCGCVCADNRTKISQCPESEKRCGVQYSDFFQAAMCAIPNPVEWPPLLQLPAPPNRAVRTGFLPFFDLPDASCRRTDSCPLSLLFTGENHSFALSVSENMFRSALSISDFGSNFLAGLAVNVLGSESKPGRNNFIEPAFSSKLPIYYLQTNCTGTENSGFSFPSLTGANNEIKCALAKNLWRNSSTEINSELYKGYQRGNSEGQINEIVSAFDFLNSNGNRYNVGIWYNSTYYQEDTGISANALLRIPRSVNLISNSYLQFLLGPGTKIIFEFVKEMPKPETIFRLDISSIVGSLFFTWVILQLFPVILTSLVYEKQQKLRIMMKMHGLGDRPYWMISYGYFLVISVIYMLCFVIFGSLLGLKIFTVNDYSIQFVFYFIYINLQIALAFLVATMFSNVKTATVTAYIGVFGTGLLGGFLFRFFVQNTSFPRGWIILMELYPGFALYRGLYELAQFSIQGNRRGTDGMKWHSLSESTNGMKEVLIIMFAEWIVILFAAFYIDQVLSSGSRKCPLFLLKGFQKKSPFQKLDTQMEVSKEFSQMEKPDVIQEKEKVEELLLEPTINHAILCDDLRKVYPGRDGNPDKFAVRGLFLSVPHGECFGMLGPNGAGKTSFINMMIGLTKPTSGRAFVQGLDIRTQMGGIYTTMGVCPQHDLLWDSLTGREHLLFYGRLKNLRGSVLTQAVEDSLKGLNLFHGGVADKQVGKYSGGMKRRLSVAISLIGDPKVVYMDEPSSGLDPASRKSLWNVVKHAKQNRAIILTTHSMEEAEALCDRLGIFVNGSLQCVGNAKELKARYGGTYVLTVTTSSEHEKDVENMVQKLTPNANKIYHLSGTQKFELPKEDVRISDVFQAVDVAKRKFSVCAWGLVDTTLEDVFIKVAREAQAFDTLS 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04560 949 CDD ABC_subfamily_A 631 852 - -
Viun3g04560 949 SMART AAA_5 657 841 IPR003593 GO:0016887
Viun3g04560 949 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 627 864 IPR003439 GO:0005524
Viun3g04560 949 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 626 855 IPR027417 -
Viun3g04560 949 Gene3D - 619 894 IPR027417 -
Viun3g04560 949 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 602 943 IPR026082 GO:0016020|GO:0055085|GO:0140359
Viun3g04560 949 FunFam ABC transporter A family member 7 616 892 - -
Viun3g04560 949 Pfam ABC transporter 652 793 IPR003439 GO:0005524
Viun3g04560 949 ProSitePatterns ABC transporters family signature. 766 780 IPR017871 GO:0005524|GO:0016887
Viun3g04560 949 Pfam ABC-2 family transporter protein 262 560 IPR013525 GO:0016020|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04560 Viun-Chr3 53235591 53252775 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04560 636 875 Calmodulin-binding Proteins AT2G36910 24.291 9.17e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04560 - - vra:106769009 1731.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04560 3 53235591 53252775 Viun3g04560 3 53235591 53252775 ECH