LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun3g04558	ATGGGTAAGTCACCAGGAAAATGGATCAAAACCGTACTGTTTGGGAAAAAGTCATCCAAATCAAATATTTCAAAAAGCAGAGAGCTTGTTAATAAAAAAGGAGTAATAGTTACCTCCAAGGTGCCGGAAACGGGTTTGTCCTTAGAACCAACCTCCGATACTATTCCCAATCACGATGAAGTCCAGGAGATGGAAAACAAAGAAGCAGATAATATTTTACCTGACAATCAAGAAATAGACTTAGTAGGATCTACTAATGAAGAGGATGCACTGGATCCAGAGAAAACGAGGCTGGAGGAAGCAGCAACAAAGGCACAAGCTGCTTTCAGGGGTTATTTGGCTCGGAGAGCATTTAGGGCCCTGAAAGGCATAATAAGGCTGCAAGCACTCATTCGTGGGCACTTGGTTAGGAGACAAGCTGTTGTTACATTATGCTCTATGTATGGTATTGTCAAGTTCCAAGCACTTGCTCGTGGAGGAAGAGTTAGGCAGTCTAATGTTGGATCTGAAATCCATGAGAAATGCAACCCTCTGGATGGCAAATTTGTCAAGCCAATTGCTATATCCACGAAAATTGCAAAGCTGTCAGCAAATGCATTCATTCTTAAGCTTTTTACTTCGTCAACTACAATAATGGCATTGCGTTTGCAATATGTTCCGGGTGATCCAAATTCAGTCCTAAGTTGGTTGGAGCGCTGGTCAGCATCTCAATTTTGGAAACCAGTTCCCCAACCCAAGAAAATTCAGGATAGTAAGGCTCAAAGAAAGCATGGCAGTATTTCAGTTGGAGATACTCAAACGAGTAAGTCAAAACGTACGAACAGGAAGCTTCCTACTTCGAATTTTGATTCAGTACCAGTGCTAGCAAATCCTGAATTTGAAAAACCTAAAAGAAACACAAGGAAAATTCCAAGTCAAACCTCAGATCCCGTGCAGGAAAATCCACAAAATGAGCTTGAAAAGGTTAAACGTAACTTGAGAAAGGTTCATAGTCCTGTTGTTGAGAATGCTGTTCCTTCAGAAGTTGAAACTGAGATGCCAAAGGAACATTTGGAAAAGGCCACAGTTACCTCATCCCTTTCTGTTTCAGAACAAGAGGTCGTTAGTTTTAATGAGAAGGTCAAGAAGGAAGCAGCATTAACTGTTTCCAGTGTGCTAGATATAGAAACTACTCCAAGACTTTCAGCTAGTAATGAAATGCTTGACACACCAACCAGTAATCAAGTGACTGTGGAATCGAAGCCGTTGACTGAAATTACAACTAAAGATAAAAATATTTCCGATGAATTAAAAAATGAGCCCATAGATTTGCCAGAGCTTATATATAAAGATGAAAATTCTCACTTGACAAATGGAGATTTGAGTCACAAGGAAGATCCAATAGGCAGTGAAAACCAGAAACCGAACAGAAAAGGGTCTAATGTAGCAAAGCAGGAACGTGCAGATAATGGAATACAGAATAGTCCAACTTTGCCAAGTTACATGGCAGCAACTGAATCTGCAAAGGCAAAGTTAAGGGCACAAGGATCCCCGAGATTTGGACAAGATGGAAGTGAAAGAAACAACCAGACCCGGCGCCATTCTTTGCCATCATCAACTAACAGCAAAATTAGTTCGCATTCACCTAGGACACATAGACCAGTTCACTCAGGTGGCAAAGGGGGCAACAGAAGTGACAGAACTGTATCATCATCTTCTAGAGATGGGAATGGAAAGGTAATTCAAGCAGAGTGGAGGAGGTAA	1743	0.4114	MGKSPGKWIKTVLFGKKSSKSNISKSRELVNKKGVIVTSKVPETGLSLEPTSDTIPNHDEVQEMENKEADNILPDNQEIDLVGSTNEEDALDPEKTRLEEAATKAQAAFRGYLARRAFRALKGIIRLQALIRGHLVRRQAVVTLCSMYGIVKFQALARGGRVRQSNVGSEIHEKCNPLDGKFVKPIAISTKIAKLSANAFILKLFTSSTTIMALRLQYVPGDPNSVLSWLERWSASQFWKPVPQPKKIQDSKAQRKHGSISVGDTQTSKSKRTNRKLPTSNFDSVPVLANPEFEKPKRNTRKIPSQTSDPVQENPQNELEKVKRNLRKVHSPVVENAVPSEVETEMPKEHLEKATVTSSLSVSEQEVVSFNEKVKKEAALTVSSVLDIETTPRLSASNEMLDTPTSNQVTVESKPLTEITTKDKNISDELKNEPIDLPELIYKDENSHLTNGDLSHKEDPIGSENQKPNRKGSNVAKQERADNGIQNSPTLPSYMAATESAKAKLRAQGSPRFGQDGSERNNQTRRHSLPSSTNSKISSHSPRTHRPVHSGGKGGNRSDRTVSSSSRDGNGKVIQAEWRR	580

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun3g04558	580	MobiDBLite	consensus disorder prediction	479	495	-	-
	Viun3g04558	580	ProSiteProfiles	IQ motif profile.	98	126	IPR000048	GO:0005515
	Viun3g04558	580	MobiDBLite	consensus disorder prediction	396	580	-	-
	Viun3g04558	580	Coils	Coil	580	580	-	-
	Viun3g04558	580	ProSiteProfiles	IQ motif profile.	122	149	IPR000048	GO:0005515
	Viun3g04558	580	SMART	iq_5	97	119	IPR000048	GO:0005515
	Viun3g04558	580	SMART	iq_5	120	141	IPR000048	GO:0005515
	Viun3g04558	580	MobiDBLite	consensus disorder prediction	417	443	-	-
	Viun3g04558	580	MobiDBLite	consensus disorder prediction	449	465	-	-
	Viun3g04558	580	Pfam	Protein of unknown function (DUF4005)	478	558	IPR025064	-
	Viun3g04558	580	Pfam	IQ calmodulin-binding motif	122	139	IPR000048	GO:0005515
	Viun3g04558	580	Pfam	IQ calmodulin-binding motif	100	119	IPR000048	GO:0005515
	Viun3g04558	580	PANTHER	IQ-DOMAIN 5-RELATED	1	535	-	-
	Viun3g04558	580	MobiDBLite	consensus disorder prediction	244	317	-	-
	Viun3g04558	580	MobiDBLite	consensus disorder prediction	556	571	-	-
	Viun3g04558	580	MobiDBLite	consensus disorder prediction	514	541	-	-
	Viun3g04558	580	MobiDBLite	consensus disorder prediction	255	286	-	-
	Viun3g04558	580	Gene3D	-	95	145	-	-
	Viun3g04558	580	MobiDBLite	consensus disorder prediction	396	416	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun3g04558	Viun-Chr3	53217670	53225422	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun3g04558	1	580	IQD Protein Family	AT1G74690	44.209	5.53e-123	373

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun3g04558	-		-	gmx:100794636	946.036