Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04556 ATGGGTAAGTCACCAGGAAAATGGATCAAAACCGTACTGTTTGGGAAAAAGTCATCCAAATCAAATATTTCAAAAAGCAGAGAGAAGCTTGTTAATAAAAAAGGAGTAATAGTTACCTCCAAGGTGCCGGAAACGGGTTTGTCCTTAGAACCAACCTCCGATACTATTCCCAATCACGATGAAGTCCAGGAGATGGAAAACAAAGAAGCAGATAATATTTTACCTGACAATCAAGAAATAGACTTAGTAGGATCTACTAATGAAGAGGATGCACTGGATCCAGAGAAAACGAGGCTGGAGGAAGCAGCAACAAAGGCACAAGCTGCTTTCAGGGGTTATTTGGCTCGGAGAGCATTTAGGGCCCTGAAAGGCATAATAAGGCTGCAAGCACTCATTCGTGGGCACTTGGTTAGGAGACAAGCTGTTGTTACATTATGCTCTATGTATGGTATTGTCAAGTTCCAAGCACTTGCTCGTGGAGGAAGAGTTAGGCAGTCTAATGTTGGATCTGAAATCCATGAGAAATGCAACCCTCTGGATGGCAAATTTGTCAAGCCAATTGCTATATCCACGAAAATTGCAAAGCTGTCAGCAAATGCATTCATTCTTAAGCTTTTTACTTCGTCAACTACAATAATGGCATTGCGTTTGCAATATGTTCCGGGTGATCCAAATTCAGTCCTAAGTTGGTTGGAGCGCTGGTCAGCATCTCAATTTTGGAAACCAGTTCCCCAACCCAAGAAAATTCAGGATAGTAAGGCTCAAAGAAAGCATGGCAGTATTTCAGTTGGAGATACTCAAACGAGTAAGTCAAAACGTACGAACAGGAAGCTTCCTACTTCGAATTTTGATTCAGTACCAGTGCTAGCAAATCCTGAATTTGAAAAACCTAAAAGAAACACAAGGAAAATTCCAAGTCAAACCTCAGATCCCGTGCAGGAAAATCCACAAAATGAGCTTGAAAAGGTTAAACGTAACTTGAGAAAGGTTCATAGTCCTGTTGTTGAGAATGCTGTTCCTTCAGAAGTTGAAACTGAGATGCCAAAGGAACATTTGGAAAAGGCCACAGTTACCTCATCCCTTTCTGTTTCAGAACAAGAGGTCGTTAGTTTTAATGAGAAGGTCAAGAAGGAAGCAGCATTAACTGTTTCCAGTGTGCTAGATATAGAAACTACTCCAAGACTTTCAGCTAGTAATGAAATGCTTGACACACCAACCAGTAATCAAGTGACTGTGGAATCGAAGCCGTTGACTGAAATTACAACTAAAGATAAAAATATTTCCGATGAATTAAAAAATGAGCCCATAGATTTGCCAGAGCTTATATATAAAGATGAAAATTCTCACTTGACAAATGGAGATTTGAGTCACAAGGAAGATCCAATAGGCAGTGAAAACCAGAAACCGAACAGAAAAGGGTCTAATGTAGCAAAGCAGGAACGTGCAGATAATGGAATACAGAATAGTCCAACTTTGCCAAGTTACATGGCAGCAACTGAATCTGCAAAGGCAAAGTTAAGGGCACAAGGATCCCCGAGATTTGGACAAGATGGAAGTGAAAGAAACAACCAGACCCGGCGCCATTCTTTGCCATCATCAACTAACAGCAAAATTAGTTCGCATTCACCTAGGACACATAGACCAGTTCACTCAGGTGGCAAAGGGGGCAACAGAAGTGACAGAACTGTATCATCATCTTCTAGAGATGGGAATGGAAAGGTAATTCAAGCAGAGTGGAGGAGGTAA 1746 0.4112 MGKSPGKWIKTVLFGKKSSKSNISKSREKLVNKKGVIVTSKVPETGLSLEPTSDTIPNHDEVQEMENKEADNILPDNQEIDLVGSTNEEDALDPEKTRLEEAATKAQAAFRGYLARRAFRALKGIIRLQALIRGHLVRRQAVVTLCSMYGIVKFQALARGGRVRQSNVGSEIHEKCNPLDGKFVKPIAISTKIAKLSANAFILKLFTSSTTIMALRLQYVPGDPNSVLSWLERWSASQFWKPVPQPKKIQDSKAQRKHGSISVGDTQTSKSKRTNRKLPTSNFDSVPVLANPEFEKPKRNTRKIPSQTSDPVQENPQNELEKVKRNLRKVHSPVVENAVPSEVETEMPKEHLEKATVTSSLSVSEQEVVSFNEKVKKEAALTVSSVLDIETTPRLSASNEMLDTPTSNQVTVESKPLTEITTKDKNISDELKNEPIDLPELIYKDENSHLTNGDLSHKEDPIGSENQKPNRKGSNVAKQERADNGIQNSPTLPSYMAATESAKAKLRAQGSPRFGQDGSERNNQTRRHSLPSSTNSKISSHSPRTHRPVHSGGKGGNRSDRTVSSSSRDGNGKVIQAEWRR 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04556 581 MobiDBLite consensus disorder prediction 480 496 - -
Viun3g04556 581 MobiDBLite consensus disorder prediction 397 417 - -
Viun3g04556 581 SMART iq_5 98 120 IPR000048 GO:0005515
Viun3g04556 581 SMART iq_5 121 142 IPR000048 GO:0005515
Viun3g04556 581 PANTHER IQ-DOMAIN 5-RELATED 1 536 - -
Viun3g04556 581 MobiDBLite consensus disorder prediction 397 581 - -
Viun3g04556 581 MobiDBLite consensus disorder prediction 245 318 - -
Viun3g04556 581 MobiDBLite consensus disorder prediction 557 572 - -
Viun3g04556 581 Gene3D - 96 146 - -
Viun3g04556 581 ProSiteProfiles IQ motif profile. 123 150 IPR000048 GO:0005515
Viun3g04556 581 MobiDBLite consensus disorder prediction 515 542 - -
Viun3g04556 581 MobiDBLite consensus disorder prediction 256 287 - -
Viun3g04556 581 Pfam Protein of unknown function (DUF4005) 479 559 IPR025064 -
Viun3g04556 581 ProSiteProfiles IQ motif profile. 99 127 IPR000048 GO:0005515
Viun3g04556 581 Pfam IQ calmodulin-binding motif 101 120 IPR000048 GO:0005515
Viun3g04556 581 Pfam IQ calmodulin-binding motif 123 140 IPR000048 GO:0005515
Viun3g04556 581 MobiDBLite consensus disorder prediction 418 444 - -
Viun3g04556 581 MobiDBLite consensus disorder prediction 450 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04556 Viun-Chr3 53217282 53225422 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04556 1 581 IQD Protein Family AT1G74690 44.209 5.31e-125 378
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04556 - - gmx:100794636 952.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g01042 2 21257531 21263032 Viun3g04556 3 53217282 53225422 ECH
Viun3g04556 3 53217282 53225422 Viun3g04556 3 53217282 53225422 ECH