Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04552 ATGGAGCTTCCTTCCGAGAGATCTGGTGACGGAGGAAGTGGACTCAAGGAAGAAAACAGAACTCATGACTATACTGTTGCTGATGATGAAGATGGTCCTCGTAAACAACAGATTCTTGTCGAGGAACCACCCATAGAGGAGGCTGGACCTAGCACATCCGCAGACAAAAAGGAAGAGGTTGATGATCAACTTGAGAGCACCAAAGCTGAAATGGGTGTGGTGAGAGAAGAAAATCAGCGGTTAAAGAGGTCTCTGCACAAAATAATGAATGAGTATCGGACACTGGAAATGCAATTTCAAGACATACTTAAGCAAGGGACAAAAAGGAAACTAGTTGATAAAGGAAATGGTAACGAAGAAGACACAGTAGAGGAATCGGATCTAGTTTCTCTCAGCCTGGGAAGAGTTCCAAGCAATCAAAGAAACGATGAGAAAATAAAAGTTTATAAGGCATTGAAGGATGATGAAGGGTTTAACCAAGAGTTGACTCTTGGACTAGAGTGCAAATCAAAGTCAGGAAGCACAACTGAAGCTTTGCCTAATCCAAGCCCAGAAAACAGTTCTGAAGTCCCAAAGGAAGAAGCTGGGGAAACTTGGCCACCCAGTAAGGAGACACAGAAGGCAATTAGGGACACAGAGGATGAAGTTGCTCAGCAAAACCCTATGAAGAAGCCACGAGTTTGCGTTAGAGCAAGATGTGACACTCCAACAATGAACGATGGATGTCAATGGAGGAAATATGGACAGAAGATTGCAAAGGGAAATCCTTGCCCTCGAGCGTACTATCGTTGCACCATTGCACCATCATGCCCGGTCAGAAAACAGGTACAAAGATGTGTTGATGACATGTCGATTTTAATTACCACGTATGAAGGGACCCACAACCACACTCTTCCACCTTCAGCTACTGCCATGGCATCCACAACTTCTGCAGCAGCCTCCATGCTTCTTTCTGGTTCATCAACCTCTCTTTCCGCCTCAGCACCTTCATCAACAGCAACCACTTCTGCTACCAATCTCCACGGCCTCAATTTCTATCTCTCAGATGGTGCAAAACCAAGGCAATTATACCTCTCCAACCCTGCACTCTCATCTTCACCTTCACATCCAACCATCACTCTCGACCTCACTTCACACCCAGCTTCTTCCTCCTCGTCACCCTTCGTTAGATTCACTTCAAACTACAACCAACCCAGATACCCCTCTTCCTCAAGCCTAAGCTTCAGTAGTTCCTCAGAAATCAACGCATTGTCTTGGAGCAACGGCTTCCTTACCAATAATAATAATACTATTCAACCTACATACAATAGCAGGAACATACTTGGGAACGTAAACTTTGGGAGACAACAAGTGGAAAATATATACCAATCCTACATGCAAAAGAACAACAGCAATATTCCAAGCGTTCCTCAAGGTGGTGTACCAGCTGATACTATATCTGCAGCAACGAAAGTGATCACAGCAGACCCCAATTTTCAATCAGCTTTGGCAGCAGCGCTCACTTCGTTTATCGGTGGCGGTGTTCGAGGAAATCAAGGTGGTAACAGTGTCGGTGAAAGTCCGAGTTTGGGTCAGAACTTGAAGTGGGGTGAGGTGTTCGCAGCGTCTAATAATTCATCTTCTACCTTGTCTTGTTCAACTTCGAAAGTCAACGGTTGTGCATCGAGCTTCTTGAACAAAACGCCGGCGAATAATACACAGACGAAAAGTTTGATGTTTCCACCACCTTCGTCTTTGCCGTTTTCTACCCCCAAAAGTGCATCTGCATCTCCTGCTGATAATAGCGACACCACCAATTAA 1800 0.45 MELPSERSGDGGSGLKEENRTHDYTVADDEDGPRKQQILVEEPPIEEAGPSTSADKKEEVDDQLESTKAEMGVVREENQRLKRSLHKIMNEYRTLEMQFQDILKQGTKRKLVDKGNGNEEDTVEESDLVSLSLGRVPSNQRNDEKIKVYKALKDDEGFNQELTLGLECKSKSGSTTEALPNPSPENSSEVPKEEAGETWPPSKETQKAIRDTEDEVAQQNPMKKPRVCVRARCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTIAPSCPVRKQVQRCVDDMSILITTYEGTHNHTLPPSATAMASTTSAAASMLLSGSSTSLSASAPSSTATTSATNLHGLNFYLSDGAKPRQLYLSNPALSSSPSHPTITLDLTSHPASSSSSPFVRFTSNYNQPRYPSSSSLSFSSSSEINALSWSNGFLTNNNNTIQPTYNSRNILGNVNFGRQQVENIYQSYMQKNNSNIPSVPQGGVPADTISAATKVITADPNFQSALAAALTSFIGGGVRGNQGGNSVGESPSLGQNLKWGEVFAASNNSSSTLSCSTSKVNGCASSFLNKTPANNTQTKSLMFPPPSSLPFSTPKSASASPADNSDTTN 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04552 599 MobiDBLite consensus disorder prediction 11 41 - -
Viun3g04552 599 ProSiteProfiles WRKY domain profile. 233 299 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun3g04552 599 MobiDBLite consensus disorder prediction 51 71 - -
Viun3g04552 599 Gene3D WRKY domain 223 300 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun3g04552 599 FunFam probable WRKY transcription factor 31 223 300 - -
Viun3g04552 599 MobiDBLite consensus disorder prediction 1 71 - -
Viun3g04552 599 Pfam WRKY DNA -binding domain 239 296 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun3g04552 599 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 49 516 IPR044810 GO:0003700
Viun3g04552 599 Coils Coil 57 98 - -
Viun3g04552 599 MobiDBLite consensus disorder prediction 564 599 - -
Viun3g04552 599 SMART WRKY_cls 238 298 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun3g04552 599 SUPERFAMILY WRKY DNA-binding domain 231 299 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun3g04552 599 MobiDBLite consensus disorder prediction 170 208 - -
Viun3g04552 599 MobiDBLite consensus disorder prediction 190 208 - -
Viun3g04552 599 MobiDBLite consensus disorder prediction 170 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04552 Viun-Chr3 53176714 53180921 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04552 51 509 WRKY Transcription Factor Family AT1G18860 41.509 1.12e-83 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Viun3g04552 WRKY 1.9e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04552 - - pvu:PHAVU_003G192000g 969.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g00605 5 3664654 3667427 Viun3g04552 3 53176714 53180921 ECH
Viun3g04552 3 53176714 53180921 Viun3g04552 3 53176714 53180921 ECH