Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04532 ATGGGGATTGTAGCATGCATTTCTCTGGTGATTATGGTGACAGTTTTCTGTCCTTCTTCTCTTGCTCTCACCAAGGATGGCCTGACCTTGTTGGAAATCAAAAGTGCTTTGAAGGATACTACGAATGCTCTGAGCAACTGGCAAGAGTCTGATGAGACTCATTGTAACTGGACTGGTATCTATTGCCACCCTGGCGATGAGCAAAGAGTTCGCATAATAAATCTGCCATACTTGCAACTTGGCGGAATTTTATCTCCCAGCATTGGTAAACTCAGTGGACTACAAAGACTGGCACTTCATCATAACAACTTGCATGGAACCATTCCTAAAGAACTTACCGATTGTTCTGATCTAAGAGCACTGTACTTGAGGGGTAACTTTTTCCGAGGATGCATACCGTCAAACATTGGAAATATTCCATATTTGAATATACTGGATTTATCCAGTAACTCATTGAAAGGTGCCATACCTTGCTCTATTGGCCATCTCTCACAGTTGCAAATTCTGAACTTGACTATCAATTCCTTGTCTGGTGAAATTCCTGAATATGGAGTACTGAGCAACTTTGGCATATACTCGTTTGAGGGAAATCCAGGTCTCTGTGGGCGGCAAATCGAAAAGCCATGTCGGACATCACTTGGTTTTCCTGTTGTGCTCCCCCATGCTGAAAGTGATCAAGCTGCAGTCCCTGCCAAAAGGTCTTCACATTTCATGACCATTATGCTAATTTATGCAATAGCAATTATGTGTGTCGCACTTGTCATGGTCTTTGCATATCTGTGGACTCGTTTGATACCAAAGAATGAACAAGCTGCAAAGAGACACACGGTAGTCAAGAAACAAAAGAAACAAGTTCATCCAAGAACAAGCGCAAAACTTATTGCTTTCCATGGTGATCTGCCATATACATCGTCTGAGATCGTAGAGAAGCTAGAGTATCTAGATGAAGCGGATATAGTAGGATCCGGAGGATATGGTACTGTTTACTGTATGAGGATAAGATATAATCGTTTATTGGCTGTTAAACAGATTGATGGAAGTTGTGAAGGGTCTGATCAAGTGTTTGAAAGGGAATTAGAGGTCTTGGGGAGCATCAAACACAGAAATCTAGTAAATATGCGTGGTTACCTCAGGCTTCCTTCTTCAAGACTCCTTATCTATACCTATTTCCCCATGGGCAGTGTAGATGATCTCTTGCATGAAGAAGATCAACAAGGACGAGTTCATAGGTGGGGTGATCGCCTAAGGATAGCTCTTGGTTCTGCCCGGGGTTTGGCTTACTTGCACCATGAATGCAACCCAAAGATCGTTCACCGTAACATAAAATCTAGCAACGTACTCCTTGATGAATGTTTGGAGCCATATATATCTGATTTTGGCCTTGCAGACCTTTTGGTCGATGAGAAGGCACATGTTACCACAGTGGTAGCTGGCACATTTGGTTATTTGGCACCAGAGTATCTACAAAGTGGAAGAGCAACTGAGAAGTCAGATGTGTATAGCTTCGGAGTTCTTTTACTCGAACTTGTAACTGGGAAGAGGCCAACAGATCCATCATTTGTGAAAAGAGGTTTAAATGTTGTTGGCTGGGTGAACACATTAATGAGGGATAACAGATTGGAAGACGTGGTGGACAAAAGATGCAGAAAAGTAGATCCAGAAACCGTTGAGGTAATTCTTGAGCTAGCAGCAAGATGCACTGATGGAAATGCAGATGATCGTCCATCAATGAACCAGGTGTTACAGTCGCTGGAACAAGACGTTAAGTATCCTCCTCCAATCTTGTTTTATGAGTCTGAGTTCGATTACTGA 1812 0.4249 MGIVACISLVIMVTVFCPSSLALTKDGLTLLEIKSALKDTTNALSNWQESDETHCNWTGIYCHPGDEQRVRIINLPYLQLGGILSPSIGKLSGLQRLALHHNNLHGTIPKELTDCSDLRALYLRGNFFRGCIPSNIGNIPYLNILDLSSNSLKGAIPCSIGHLSQLQILNLTINSLSGEIPEYGVLSNFGIYSFEGNPGLCGRQIEKPCRTSLGFPVVLPHAESDQAAVPAKRSSHFMTIMLIYAIAIMCVALVMVFAYLWTRLIPKNEQAAKRHTVVKKQKKQVHPRTSAKLIAFHGDLPYTSSEIVEKLEYLDEADIVGSGGYGTVYCMRIRYNRLLAVKQIDGSCEGSDQVFERELEVLGSIKHRNLVNMRGYLRLPSSRLLIYTYFPMGSVDDLLHEEDQQGRVHRWGDRLRIALGSARGLAYLHHECNPKIVHRNIKSSNVLLDECLEPYISDFGLADLLVDEKAHVTTVVAGTFGYLAPEYLQSGRATEKSDVYSFGVLLLELVTGKRPTDPSFVKRGLNVVGWVNTLMRDNRLEDVVDKRCRKVDPETVEVILELAARCTDGNADDRPSMNQVLQSLEQDVKYPPPILFYESEFDY 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04532 603 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 68 586 - -
Viun3g04532 603 Pfam Leucine rich repeat N-terminal domain 25 62 IPR013210 -
Viun3g04532 603 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 23 186 - -
Viun3g04532 603 Gene3D Phosphorylase Kinase; domain 1 288 389 - -
Viun3g04532 603 SUPERFAMILY Protein kinase-like (PK-like) 298 585 IPR011009 -
Viun3g04532 603 SUPERFAMILY L domain-like 24 198 - -
Viun3g04532 603 Gene3D Transferase(Phosphotransferase) domain 1 390 590 - -
Viun3g04532 603 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 390 592 - -
Viun3g04532 603 Pfam Protein kinase domain 317 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g04532 603 ProSiteProfiles Protein kinase domain profile. 314 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g04532 603 Gene3D Ribonuclease Inhibitor 24 211 IPR032675 -
Viun3g04532 603 ProSitePatterns Protein kinases ATP-binding region signature. 320 342 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04532 Viun-Chr3 53048801 53053016 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04532 9 593 Receptor kinase-like Gene Family AT2G35620 43.590 6.21e-166 484
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIa Viun3g04532 Pkinase 7.9e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04532 - - gmx:100803920 904.82