Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04524 ATGGGGGACAAGTCCCAAGTGCTCGAGGCTGTGTTGAAGGAAACTGTGGATTTGGAGAACATACCCATTGAGGAGGTTTTGGAGAATCTGAGATGTGGCAGGGAAGGTCTCAGCAGTGAAGCTGCTGAGGAGAGGCTTACCATTTTTGGTCACAACAAGCTTGAAGAGAAGAAAGAGAGCAAATTTTTGAAGTTTTTGGGATTTATGTGGAATCCTCTATCATGGGTTATGGAGGCTGCTGCTATAATGGCCATTGCGCTTGCAAATGGAGGGGGGAAAGCTCCTGATTGGCAAGACTTTGTGGGTATTATTACCTTGCTTCTCATCAATTCAACCATCAGTTTCATCGAGGAGAACAATGCTGGTAATGCTGCAGCAGCTCTCATGGCTCGGCTAGCTCCAAAAGCAAAGGTTCTTAGAGATGGTAGGTGGAATGAGCAAGATGCCGCGGTCCTAGTTCCTGGTGACATAATCAGCATCAAGCTTGGAGATATTATTCCAGCAGATGCTCGGCTTCTTGAAGGGGATCCTTTGAAAATTGATCAATCCGCACTTACAGGTGAATCACTTCCAGTGACAAAGGGTCCTGGTGATGGAGTATACTCTGGTTCAACCTGCAAACAGGGAGAGATTGAAGCTGTGGTTATTGCTACCGGTGTTCATACATTCTTTGGGAAAGCTGCTCATCTTGTTGATACCACAAATCAAGTGGGTCACTTTCAAAAGGTCTTAACTGCAATTGGGAACTTCTGCATATGTTCAATTGCTGTGGGGATGGTTATTGAGATTGTTGTTATGTATCCCATCCAAGATAGACCGTATCGTCCTGGAATTGATAACCTCCTTGTACTTCTGATCGGAGGAATTCCAATTGCCATGCCCACAGTTTTGTCTGTGACCATGGCCATTGGTTCTCACAGGCTATCTCAGCAGGGGGCTATCACAAAGAGGATGACAGCCATTGAAGAAATGGCAGGCATGGATGTGCTTTGCAGTGATAAGACTGGGACTCTGACATTGAATAAGCTTACTGTTGACAAAAATCTAGTTGAGGTTTTTGCAAAAGGAGTGGATCCAGATACTGTTATTTTGATGGCTGCCCGAGCTTCAAGGCTTGAGAATCAAGATGCAATTGATACTGCCATAGTTGGGATGTTAGCTGATCCAAAGGAGGCACGCGCTGGTATACAAGAAGTACATTTTCTTCCTTTCAATCCTACTGACAAGCGGACGGCATTGACTTATCTTGATCAAGATGGTAAAATGCATAGAGTAAGCAAAGGTGCACCGGAACAGATCCTGAATCTTGCACACAATAAGGCAGAGATTGAACGAAGAGTTCATTCAGTGATAGACAAGTTTGCAGAGCGTGGTTTACGATCTCTTGCTGTAGCATACCAAGAAGTTCCAGATGGAAGGAAAGAGAGTGCTGGAGGTCCATGGCAATTTGTTGGCCTTTTGTCTCTCTTTGACCCACCAAGGCATGATAGTGCGGAAACAATACGGAGGGCACTAAACCTTGGAGTAAATGTCAAGATGATTACAGGGGATCAGCTAGCTATTGGAAAGGAAACAGGTCGTCGCTTGGGAATGGGTACCAATATGTATCCTTCATCAGCTTTGCTTGGGCAGGACAAGGATGAATCCATTGCTGCCTTACCAATTGATGAGCTAATAGAAAAGGCTGATGGGTTTGCTGGTGTCTTTCCTGAGCACAAGTATGAGATTGTGAAACGCTTGCAAGCTAGGAAACATATTTGTGGAATGACTGGTGATGGAGTGAATGATGCACCTGCTCTCAAGAAGGCAGACATTGGTATAGCTGTTGCTGATGCTACTGATGCAGCTCGTAGTGCATCTGATATTGTTCTAACAGAACCTGGCCTTAGTGTTATTATTAGTGCTGTTTTGACCAGCCGAGCTATCTTTCAGAGAATGAAAAATTATACAATTTATGCAGTCTCAATTACAATCCGTATTGTGCTTGGTTTCATGTTGCTGGCTCTTATATGGAAGTTTGACTTTCCACCCTTTATGGTGCTTATTATTGCCATCCTAAATGATGGAACTATTATGACAATTTCAAAAGATCGTGTAAAACCATCTCCTCTGCCAGATAGCTGGAAGCTAGCTGAGATATTTACTACTGGTGTTGTGCTTGGAAGTTACTTGGCGATGATGACAGTCATATTCTTTTGGGCAGCATACAAAACAAATTTTTTCCCACGAGTTTTTGGAGTCTCAACTCTTGAAAAAACTGCTCATGATGATTTTCGGAAACTTGCATCTGCAATCTATCTTCAAGTGAGCACTATTAGTCAGGCCCTTATATTTGTAACTCGATCACGAGGTTGGTCATATGTTGAGCGTCCTGGTATACTGCTGGTGGTTGCTTTTATAATTGCTCAACTGATTGCCACTTTGATTGCAGTATATGCCAAGTGGAGCTTTGCTGCAATTGAAGGAATAGGTTGGGGTTGGGCTGGTGTTATATGGTTGTATAACATAATATTCTACATCCCACTTGATATCATTAAATTTTTAATTCGCTATGCTCTCAGCGGTAGGGCATGGGATCTTGTCATTGAGCAAAGGATTGCATTCACAAGGCAAAAGGACTTTGGGAAGGAACAGCGTGAACTTCAATGGGCACATGCTCAAAGAACATTGCATGGATTACAACCACCTGACAGCAAGTTCACTGAGCGTACACATGTCAATGAACTCAATCAAATGGCCGAAGAAGCTAAAAGGAGAGCTGAAATTGCAAGGTAA 2775 0.4335 MGDKSQVLEAVLKETVDLENIPIEEVLENLRCGREGLSSEAAEERLTIFGHNKLEEKKESKFLKFLGFMWNPLSWVMEAAAIMAIALANGGGKAPDWQDFVGIITLLLINSTISFIEENNAGNAAAALMARLAPKAKVLRDGRWNEQDAAVLVPGDIISIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKGPGDGVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDTTNQVGHFQKVLTAIGNFCICSIAVGMVIEIVVMYPIQDRPYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLVEVFAKGVDPDTVILMAARASRLENQDAIDTAIVGMLADPKEARAGIQEVHFLPFNPTDKRTALTYLDQDGKMHRVSKGAPEQILNLAHNKAEIERRVHSVIDKFAERGLRSLAVAYQEVPDGRKESAGGPWQFVGLLSLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQDKDESIAALPIDELIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWKFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLAEIFTTGVVLGSYLAMMTVIFFWAAYKTNFFPRVFGVSTLEKTAHDDFRKLASAIYLQVSTISQALIFVTRSRGWSYVERPGILLVVAFIIAQLIATLIAVYAKWSFAAIEGIGWGWAGVIWLYNIIFYIPLDIIKFLIRYALSGRAWDLVIEQRIAFTRQKDFGKEQRELQWAHAQRTLHGLQPPDSKFTERTHVNELNQMAEEAKRRAEIAR 924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04524 924 NCBIfam plasma-membrane proton-efflux P-type ATPase 36 812 IPR006534 GO:0008553|GO:0016020|GO:0120029
Viun3g04524 924 Gene3D - 96 821 - -
Viun3g04524 924 FunFam ATPase 4 plasma membrane-type 575 821 - -
Viun3g04524 924 SFLD p-type atpase 313 641 IPR044492 -
Viun3g04524 924 FunFam Plasma membrane ATPase 343 490 - -
Viun3g04524 924 Gene3D - 328 627 IPR023214 -
Viun3g04524 924 Pfam Cation transporter/ATPase, N-terminus 20 83 IPR004014 -
Viun3g04524 924 CDD P-type_ATPase_H 36 847 IPR006534 GO:0008553|GO:0016020|GO:0120029
Viun3g04524 924 Pfam haloacid dehalogenase-like hydrolase 327 604 - -
Viun3g04524 924 ProSitePatterns E1-E2 ATPases phosphorylation site. 333 339 IPR018303 -
Viun3g04524 924 Coils Coil 906 924 - -
Viun3g04524 924 Gene3D - 343 490 IPR023299 GO:0000166
Viun3g04524 924 SMART Cation_ATPase_N_a_2 17 89 IPR004014 -
Viun3g04524 924 FunFam Plasma membrane ATPase 482 638 - -
Viun3g04524 924 NCBIfam HAD-IC family P-type ATPase 103 365 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun3g04524 924 NCBIfam HAD-IC family P-type ATPase 565 678 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun3g04524 924 PANTHER CALCIUM-TRANSPORTING ATPASE 19 889 - -
Viun3g04524 924 Pfam E1-E2 ATPase 132 310 - -
Viun3g04524 924 Gene3D - 904 924 - -
Viun3g04524 924 Gene3D - 134 218 - -
Viun3g04524 924 SFLD Haloacid Dehalogenase 313 641 - -
Viun3g04524 924 SUPERFAMILY Calcium ATPase, transmembrane domain M 17 853 IPR023298 -
Viun3g04524 924 PRINTS P-type cation-transporting ATPase superfamily signature 181 195 - -
Viun3g04524 924 PRINTS P-type cation-transporting ATPase superfamily signature 590 609 - -
Viun3g04524 924 PRINTS P-type cation-transporting ATPase superfamily signature 507 517 - -
Viun3g04524 924 PRINTS P-type cation-transporting ATPase superfamily signature 331 345 - -
Viun3g04524 924 PRINTS P-type cation-transporting ATPase superfamily signature 485 496 - -
Viun3g04524 924 PRINTS P-type cation-transporting ATPase superfamily signature 613 625 - -
Viun3g04524 924 SUPERFAMILY HAD-like 327 637 IPR036412 -
Viun3g04524 924 FunFam Plasma membrane ATPase 134 218 - -
Viun3g04524 924 SUPERFAMILY Calcium ATPase, transduction domain A 134 231 IPR008250 -
Viun3g04524 924 PRINTS H+-transporting ATPase (proton pump) signature 766 787 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun3g04524 924 PRINTS H+-transporting ATPase (proton pump) signature 621 646 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun3g04524 924 PRINTS H+-transporting ATPase (proton pump) signature 590 606 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun3g04524 924 PRINTS H+-transporting ATPase (proton pump) signature 447 465 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun3g04524 924 PRINTS H+-transporting ATPase (proton pump) signature 562 578 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04524 Viun-Chr3 52990799 52996489 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04524 1 924 Primary Pumps ATPases AT5G62670 93.189 0.0 1734
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04524 K01535 - gmx:100819324 1709.89