Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04521 ATGGGGAACTGCAACGCGTGCGTGAGAGATGACGTGGCAGAGTCGAACCGCGTGAGGAAGAAGAAAACGAAGCCCAACCCTTACGCGGAGGAGGCGCTCCGTTCGGGGGTTCCGATCCGCGTGCTGAAGGACGTGACGTCACGGAGCCTCATCGGGGACAAGTACGTGATAGGTCGGGAGCTAGGTCGGGGGGAGTTCGGGATAACGTATCTGTGCACGGACCGGGAGACGAAGCAGGAGCTGGCCTGCAAGTCCATCTCCAAGCGCAAGCTCAGGACCGCCGTCGACGTGGAGGACGTGCGGCGCGAGGTCGCCATCATGTCCACGCTGCCGGACCACGCCAACGTCGTCAAGCTCAAAGCCAGTTACGAGGACCAGGAGAACGTTCACCTCGTCATGGAGCTCTGTGCCGGTGGCGAACTCTTTGACCGGATCGTCGCACGTGGCCACTACAGCGAGCGTGCGGCCGCGCACGTGGCCAGAACCATTGCCGAGGTCGTCAGAATGTGTCACGCCAATGGCGTCATGCATCGAGACCTTAAGCCCGAGAATTTCCTCTTTGCGAATAAGAAGGAGAATTCTGTACTCAAAGCTATTGATTTCGGTCTCTCCGTGTTTTTCAAACCTGAGGACGAACGAGGGGTGGCTCTGGCGATTTTGAGGGGAGTGATTGACTTCAAGAGAGAACCGTGGCCTCAGATTTCGGACAGTGCTAAGAGCCTTGTGCGCCAAATGTTGGAGCCTGACCCCAAGAAGCGCTTGACGGCTGAACAGGTGCTTGAACATCCCTGGTTGCAAAATGCAAAGAAAGCTTCAAATGTTCCGTTAGGAGACATTGTGAGGACGAGGCTTAAGCAGTTCTCTGTCATGAATAGATTCAAAAAGAGAGCACTTCGGGTAATTGCAGAGCACTTATCTGTTGAAGAGGTAGAAATCATCAAAGACATGTTTACATTGATGGATACCGACAAAGATGGGAAAGTAACATACGAGGAACTGAAGGCTGGGTTGCGGAAGGTTGGTTCACAATTGGCTGAACCTGAGATTAAGATGCTGATGGATGTGGCCGATGTTGATGGGAATGGAGTACTTGACTACGGAGAGTTTGTAGCCGTGACAATTCACTTGCAAAGAATGGAGAATGATGAGCATTTTCGAAAAGCATTCATGTTTTTTGACAAAGACGGGAGTGGCTATATTGAGTTTGGGGAGCTTGAGACAGCATTGGTGGATGAGTCAGGAGAAAACGACACTGCTGTATTGAATGACATTATGCGTGAAGTTGACACTGACAAGGATGGTCGCATCAGTTACGAAGAGTTTGTAGCGATGATGAAAACTGGGACCGATTGGAGAAAAGCATCGAGACAGTATTCAAGGGAGAGATTCAAGAGCTTGAGCATAAATTTGATGAAGGATGGGTCACTTCAGCTTCATGACGGTATTAGTGGTCAAGCTGTGGTGGTTTGA 1470 0.5122 MGNCNACVRDDVAESNRVRKKKTKPNPYAEEALRSGVPIRVLKDVTSRSLIGDKYVIGRELGRGEFGITYLCTDRETKQELACKSISKRKLRTAVDVEDVRREVAIMSTLPDHANVVKLKASYEDQENVHLVMELCAGGELFDRIVARGHYSERAAAHVARTIAEVVRMCHANGVMHRDLKPENFLFANKKENSVLKAIDFGLSVFFKPEDERGVALAILRGVIDFKREPWPQISDSAKSLVRQMLEPDPKKRLTAEQVLEHPWLQNAKKASNVPLGDIVRTRLKQFSVMNRFKKRALRVIAEHLSVEEVEIIKDMFTLMDTDKDGKVTYEELKAGLRKVGSQLAEPEIKMLMDVADVDGNGVLDYGEFVAVTIHLQRMENDEHFRKAFMFFDKDGSGYIEFGELETALVDESGENDTAVLNDIMREVDTDKDGRISYEEFVAMMKTGTDWRKASRQYSRERFKSLSINLMKDGSLQLHDGISGQAVVV 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04521 489 SMART serkin_6 55 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g04521 489 FunFam Calcium-dependent protein kinase 7 210 272 - -
Viun3g04521 489 CDD EFh 384 446 IPR002048 GO:0005509
Viun3g04521 489 ProSiteProfiles EF-hand calcium-binding domain profile. 344 379 IPR002048 GO:0005509
Viun3g04521 489 Pfam Protein kinase domain 55 210 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g04521 489 Pfam Protein kinase domain 221 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g04521 489 SUPERFAMILY EF-hand 293 472 IPR011992 -
Viun3g04521 489 FunFam Calcium-dependent protein kinase 1 57 140 - -
Viun3g04521 489 PANTHER SERINE/THREONINE-PROTEIN KINASE 47 209 - -
Viun3g04521 489 SMART efh_1 384 412 IPR002048 GO:0005509
Viun3g04521 489 SMART efh_1 312 340 IPR002048 GO:0005509
Viun3g04521 489 SMART efh_1 420 448 IPR002048 GO:0005509
Viun3g04521 489 SMART efh_1 348 376 IPR002048 GO:0005509
Viun3g04521 489 SUPERFAMILY Protein kinase-like (PK-like) 43 292 IPR011009 -
Viun3g04521 489 ProSitePatterns EF-hand calcium-binding domain. 321 333 IPR018247 -
Viun3g04521 489 ProSiteProfiles EF-hand calcium-binding domain profile. 416 451 IPR002048 GO:0005509
Viun3g04521 489 ProSitePatterns Serine/Threonine protein kinases active-site signature. 175 187 IPR008271 GO:0004672|GO:0006468
Viun3g04521 489 Gene3D - 273 449 - -
Viun3g04521 489 ProSiteProfiles EF-hand calcium-binding domain profile. 308 343 IPR002048 GO:0005509
Viun3g04521 489 CDD STKc_CAMK 54 264 - -
Viun3g04521 489 ProSitePatterns EF-hand calcium-binding domain. 357 369 IPR018247 -
Viun3g04521 489 Gene3D Phosphorylase Kinase; domain 1 56 140 - -
Viun3g04521 489 ProSitePatterns Protein kinases ATP-binding region signature. 61 84 IPR017441 GO:0005524
Viun3g04521 489 Gene3D Transferase(Phosphotransferase) domain 1 210 272 - -
Viun3g04521 489 ProSiteProfiles EF-hand calcium-binding domain profile. 380 415 IPR002048 GO:0005509
Viun3g04521 489 Gene3D Transferase(Phosphotransferase) domain 1 141 209 - -
Viun3g04521 489 ProSitePatterns EF-hand calcium-binding domain. 393 405 IPR018247 -
Viun3g04521 489 FunFam Calcium-dependent protein kinase 7 274 449 - -
Viun3g04521 489 ProSiteProfiles Protein kinase domain profile. 55 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g04521 489 ProSitePatterns EF-hand calcium-binding domain. 429 441 IPR018247 -
Viun3g04521 489 Pfam EF-hand domain pair 313 372 IPR002048 GO:0005509
Viun3g04521 489 Pfam EF-hand domain pair 383 446 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04521 Viun-Chr3 52962506 52965541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04521 1 489 EF-hand Containing Proteins AT1G18890 72.313 0.0 777
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Viun3g04521 Pkinase 1.1e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04521 K13412 - gmx:100800559 895.19