Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04519 ATGGGGCACAAAAAGCGAAACCCTGCGCCGCGCACGAAACAATCCGCGGCGGCTTCTCCGGCGGTTCAATCCGGCGTCGGCGGAGCCGCTAACGGTGCCACCTCGCCGGACGCTGATGCTAGCAATGTTTCCGATCACAAACCACATAACCCTAGCAAGATCGAATTGGCTCCGCCCCCATCCGAGGGTTCTGAGTACTCCACAATCAAGCTCGAATGCGAGCGTGCTCTCACCACGCTCCGCCGCGGGAACCACAACAAGGCAATGAAGCTGTTGCGGGAGATTTGCGCCAGAGAGGAGGGTTCGCCTCACTCTGCGTTCGTCCACCGAGTTCACAGTCTCATGTGTTTCAAAACGGCAACGGTTATCACCGACCCGAGTTCGAAGCAGCGGCATTTGAAGAACGCGCTCGAGTCAGCGCGCCGAGCGGTGGAGCTTATGCCGAATTCTGTTGAGTACGCGCATTTCCGTGCCACGGTGATGTTGGAGGCGGCAACTGAAGGTAAAGATTACGAAGATGTGGTGCATGAGTGCGAGAGGGGGCTAGCCATCGAGAACCCCAGTGATCCTGCCAAGGAGACGTTGCAGGATGAAAGCGAGCAGAAAGCATCATCTACTGAGGAGCGTATTGCGCATGTGCAGAATGAGTTGAGACAGCTTATTCAGAAGTCAAATATAGCTTCCTTGTCGTCTTGGATGAAGAATTTGAGTAACGGGGAGGAGAGATTTCGGTTTCCGATAAGGAGGACTCCGGAGGACCCGATGGAGGTGAGGCTGGTTCAAACTAGAAGGCCTAATGAAATCAAGAAGGTGACCAAGACGCCCGAGGAAAGACGGAAGGAAATTGAAGTGCGAGTGGCTGCTGCCAGGCTTTTGCAGCAGAAGTCAGAGGCACCACAATCTCCGAATGAAGGAGATAGGGATGACAGACCATTGGATTCATCTGCAGGATCTGGTCAGAGGATTGGTGATAGGAGAAGGCATGGGAATGTGAAAAAGAGTGGCTTTACAGCGGAAAAGATGAAATGGGTACACTCCTATTGGAATTCGGTTACCATGGATAGGAAGAAGGACTTTCTTAGGGTTAAAATTTGTGATCTTAAGTCGCACTATGGGTCTTCGAAGGATACTTTGCCGAATGATATCTTGTCAGAGGCTCTGTCTTATGCTGAGGTCAATAAAAATTGGAAATTCTGGCCTTGCTGCAACTGTGAAGAGAAACATTCCAACCCGGATTCTCACAGGCATCATGTTGTGCAGGAGCATATGGGGAGTCTGTCGCCACAGATGCAGAGACTTCTGCCCCAAAATGTGGATAGTGAATGGATAGAGATGATTCTTAATTGTTCTTGGAAGCCTCTGGATGTCTTAGCTGCAGTTAGAATGCTTGATAATAAAGCAAGGTTCAAAAGTCCATCACTTCCTGAGGATTTGTACTTGGATCATCATACTCTGGACTATAATGTTTGTTTTAAAGAAGCAAGCAGCTCTTACATTGAGAAGGAAAGTTCAGGCGACACTCTTCGTAATTGTTTGGAAGAATGCAATAACCATTGTAAAATTATAGAAAATGATGTAAGAGAAGGTGTTGAAGACCAACTATCTGGGGTTGATCGCATTATTGATTGTTGGCCAGTATCTGATGATCCTGAGCGTGCAAAACTTCTGGGGAAAATTCATGCCATGTTTGAGACTCTTATTAGGCATAAATGTCTTGCTGCTAGTCATCTGAACAAGGTCATACAATTTACCATTGGTGAGATACAGGGTCTCGCTGCTGGTTCTCAACTTCTAAATCATGGCGTGGACCAAACACCAATGTGCATATGCTTTCTAGGACCTTCACAGCTTAAGACAATTTTCCAATTTCTGCAGGAAATATCTCACGCGTGTGGGTTGGCCAGAAATGCTGATAAAGGTAGTAGTCCCACAAATGATTCGCTGAATATCAGTCAGGGTTCCGAGATTAAAGACAAGATTGTACTCGATGGAGATGCATCACGACTCCTACTGGATGAGTGTTTACTGCAATCACAAGTCACTGCTGGTACAAATCAGGGGTCTGTCTTGGATGATGTGACCACCCCAAGGTCTCCAGATGGAATTTCATGCTATAACAATGCTTTACTATCCTGGATATTTTCAAGTTCCGCCATTGGGGATCAAGTGACATCATGGCTGCGGATCAGAGAAGATAAAATAAATAAAGGAAAGGAAATTGTCCAGATGCTTGAGAAAGAGTTTTATAACCTACAGGGCCTATGTGAGAAAAAGGGTGAGCGTTTAAGTTATGAGGAAGCACTGCAAACAGTAGAGGATCTATGTCTTGAAGAAGGTAAGAAGAGGGAAACTGTTGGGGAATTTGTTCAGCGAAGTTATGAATCTGTCTTAAGAAAACGAAGAGAAGAGCTCATTGAGAGTGAGAATGATATGATGTATGTCAGCAATAGGTTTGAGTTGGATGCTATATCAAATGTTTTGCAAGAAGCAGAAGCAAGGAATGTTAATCAATTTGGTTACGAGGAAACTTATGCTGGTGTGACTTCTCAATTATGTGACTTGGAATCTGGTGAAGAAGATGAATGGAGAATGAAGGACTACTTGCATCAAATGGATGGCTGCATAGAAAATGCTATTCAGAAACTGAAGGAGCATTTATCTATAGAGCTTAGCAAAATTGATGCCCGAATAATTAGAAGTGTCACAGAGATGCAGCAATTGGAATTCAAGCTTGGGCCTATTTCCGCTAATGATTATCGAGCAATATTAGTGCCTCTAGTGAAGTCGTACCTAAGGGCACTTTTGGAAGATTTGGCTGAGAAGGATGCAAGAGAGAAGTCTGATGCTGCAAGTGAAGCATTTTTGGCTGAACTTGCTCTAGATTCCAAAAAGACTGTTAAAGGCGGAAGTGAGAACACCAAACATGTCGAGAAAACAAAAGATAGGAAGAAGAATAAAGATCACAGAAAAGCAAGAGATTTGAAGGCCTCCGGTGATCATGTGCAGTTCTCAGTGGGATCTACAATTCCTGATTCCAATCTAGTTGCACCTGAAAGTGACTTCCTAGATCATGAGGCTGTTTCTATGAATGACGATGACTTAGAACAACTCGAAGAGGAATTTAGACGTAAAATTGAGCTAGAAGAGGAGGAAAAGAAGCTTGAAGAAACTTTGGAATTCCAGCGAAGGATAGAAAATGAAGCCAAACAGAGGCATCTTGCAGAGCAACAAAAAAGGTCATCTGGGTTTTACTTAGAAGTGGAAGAAGATCTTCAAGATTTTCAGACAAAGGCAGTTACGGATTCGCTAGATTCATACAAACATGACCAGTTGGTACAGGATAATGGATCCCGAAGTAGTCTGGATGGTGTGCTTATGCCCACAACAAACGGTTCCATTTATTTGCATCAGTCAAAAGTTAAACAATATTTGCCTAATGGAGTTATTCGAGAGAATGGTCTACCTGTGGCTGATCGGCGCACTGGAAAAAAACATAAACGGAGGAATTCCTCCAGACCAGTCGATGGAAAGATTGAATCTTTTTCATCAGAAAAAGAGAATACTGAGGATACACATCCTGAGTCTCACTTGAGAGAGAGATTGAAATTTAATAACAGTCAAGACAATAATAATGTGTGGCAGAATAATGGATCAAATGTGATGATAGAGTTACCTGTTAAAGATGCAGAGGAGGAAAGATTCCAGGCTGATCTTGAAATTGCTGTACGCCAAAGCCTGGACACATTTCAAGCTCGGGGAAATTTGCCTTCGGCTTCCAGTTTAAGGATGTCTCAGAGAGCTTATTCAGTGGTAGATAGTGTTGATTGCCCGCCTATAGAAGACCCAACTGATAATTTGAATGGGGCTACTTTGCTTGGTACTGGACTGAAGAATGAAGTTGGCGAATATAATTGTTTTCTCAATGTTATTATACAGTCATTGTGGCATTTAAGACGCTTTCGAGTGGAATTTCTTGGCAGATCAAGAACAGAGCATGATCATGTGGGCAATCCTTGCGTTGTCTGTGCATTATACGAAATCTTTACTGCACTGGACATTGCATCAAAGGATTCAAGGAGAGAAGCAGTTGCACCTACATCCCTGCGGATAGCTCTAAGTAATCTGTATCCTCACAGTAGTTTCTTCCAGGAGGCTCAGATGAATGACGCTTCTGAGGTACTGGCAGTGATATTTGACTGCCTTCATCGGTCATTTACTCGTGGATCAAGTGTTTCTGATGAAGAATCAGCTGAAAGTAACTGCATGGGATCCTGGGATTGTGCAAATGATAGTTGTATAGCACATTCACTTTTTGGAATGAACATTTTTGAACAAATGAACTGCTATCACTGTGGTCTTGAATCCAGACATATGAAATATACTTCCTTCTTTCACAATATAAATGCCAGTGCTCTGCGTGATATGAAGGAAAAGTCTTCTGCTAGTTTCTTCGATAATCTTTTGAATCTTGTGGAGATGAACCATCAGTTGGCTTGCGATCCAGAAGCTGATGGCTGTGGCAAGCTGAACCACATCCATCACTTTCTCTCAACTCCGCCCCATGTTTTTATGACAGTACTAGGTTGGCAAAATACATGTGAGAGTGCTGATGATATAACAGCAACTCTGGCTGCCCTTAGCACCACAATCAATATCAGTGCCCTTTATGGTGGTTTAAATCTTGAATGCACCCATAACTTGGTGTCAGTGGTTTGCTACTATGGTCAGCACTACCATTGCTTTGCTTATAGCCATGACCATGAACAATGGATTATGTACGATGATAAGACTGTCAAGGTAATTGGTGGATGGGCGGATGTTCTTACAATGTGTGAAAGAGGGCATCTGCAACCTCAGGTTCTTTTCTTTGAAGCTGTAAACTAA 4884 0.4371 MGHKKRNPAPRTKQSAAASPAVQSGVGGAANGATSPDADASNVSDHKPHNPSKIELAPPPSEGSEYSTIKLECERALTTLRRGNHNKAMKLLREICAREEGSPHSAFVHRVHSLMCFKTATVITDPSSKQRHLKNALESARRAVELMPNSVEYAHFRATVMLEAATEGKDYEDVVHECERGLAIENPSDPAKETLQDESEQKASSTEERIAHVQNELRQLIQKSNIASLSSWMKNLSNGEERFRFPIRRTPEDPMEVRLVQTRRPNEIKKVTKTPEERRKEIEVRVAAARLLQQKSEAPQSPNEGDRDDRPLDSSAGSGQRIGDRRRHGNVKKSGFTAEKMKWVHSYWNSVTMDRKKDFLRVKICDLKSHYGSSKDTLPNDILSEALSYAEVNKNWKFWPCCNCEEKHSNPDSHRHHVVQEHMGSLSPQMQRLLPQNVDSEWIEMILNCSWKPLDVLAAVRMLDNKARFKSPSLPEDLYLDHHTLDYNVCFKEASSSYIEKESSGDTLRNCLEECNNHCKIIENDVREGVEDQLSGVDRIIDCWPVSDDPERAKLLGKIHAMFETLIRHKCLAASHLNKVIQFTIGEIQGLAAGSQLLNHGVDQTPMCICFLGPSQLKTIFQFLQEISHACGLARNADKGSSPTNDSLNISQGSEIKDKIVLDGDASRLLLDECLLQSQVTAGTNQGSVLDDVTTPRSPDGISCYNNALLSWIFSSSAIGDQVTSWLRIREDKINKGKEIVQMLEKEFYNLQGLCEKKGERLSYEEALQTVEDLCLEEGKKRETVGEFVQRSYESVLRKRREELIESENDMMYVSNRFELDAISNVLQEAEARNVNQFGYEETYAGVTSQLCDLESGEEDEWRMKDYLHQMDGCIENAIQKLKEHLSIELSKIDARIIRSVTEMQQLEFKLGPISANDYRAILVPLVKSYLRALLEDLAEKDAREKSDAASEAFLAELALDSKKTVKGGSENTKHVEKTKDRKKNKDHRKARDLKASGDHVQFSVGSTIPDSNLVAPESDFLDHEAVSMNDDDLEQLEEEFRRKIELEEEEKKLEETLEFQRRIENEAKQRHLAEQQKRSSGFYLEVEEDLQDFQTKAVTDSLDSYKHDQLVQDNGSRSSLDGVLMPTTNGSIYLHQSKVKQYLPNGVIRENGLPVADRRTGKKHKRRNSSRPVDGKIESFSSEKENTEDTHPESHLRERLKFNNSQDNNNVWQNNGSNVMIELPVKDAEEERFQADLEIAVRQSLDTFQARGNLPSASSLRMSQRAYSVVDSVDCPPIEDPTDNLNGATLLGTGLKNEVGEYNCFLNVIIQSLWHLRRFRVEFLGRSRTEHDHVGNPCVVCALYEIFTALDIASKDSRREAVAPTSLRIALSNLYPHSSFFQEAQMNDASEVLAVIFDCLHRSFTRGSSVSDEESAESNCMGSWDCANDSCIAHSLFGMNIFEQMNCYHCGLESRHMKYTSFFHNINASALRDMKEKSSASFFDNLLNLVEMNHQLACDPEADGCGKLNHIHHFLSTPPHVFMTVLGWQNTCESADDITATLAALSTTINISALYGGLNLECTHNLVSVVCYYGQHYHCFAYSHDHEQWIMYDDKTVKVIGGWADVLTMCERGHLQPQVLFFEAVN 1627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04519 1627 MobiDBLite consensus disorder prediction 191 208 - -
Viun3g04519 1627 MobiDBLite consensus disorder prediction 966 997 - -
Viun3g04519 1627 Gene3D Tetratricopeptide repeat domain 65 222 IPR011990 GO:0005515
Viun3g04519 1627 MobiDBLite consensus disorder prediction 301 333 - -
Viun3g04519 1627 MobiDBLite consensus disorder prediction 183 208 - -
Viun3g04519 1627 MobiDBLite consensus disorder prediction 1 66 - -
Viun3g04519 1627 MobiDBLite consensus disorder prediction 291 333 - -
Viun3g04519 1627 MobiDBLite consensus disorder prediction 1172 1203 - -
Viun3g04519 1627 Pfam Protein of unknown function (DUF629) 344 877 IPR006865 -
Viun3g04519 1627 CDD Peptidase_C19 1385 1624 - -
Viun3g04519 1627 Gene3D Cysteine proteinases 1285 1625 - -
Viun3g04519 1627 Pfam Protein of unknown function (DUF627) 75 186 IPR006866 -
Viun3g04519 1627 MobiDBLite consensus disorder prediction 1154 1215 - -
Viun3g04519 1627 PANTHER UBIQUITIN SPECIFIC PROTEINASE 1 1626 - -
Viun3g04519 1627 Coils Coil 1030 1071 - -
Viun3g04519 1627 Coils Coil 196 223 - -
Viun3g04519 1627 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1294 1626 IPR028889 -
Viun3g04519 1627 SUPERFAMILY Cysteine proteinases 1294 1624 IPR038765 -
Viun3g04519 1627 Pfam Ubiquitin carboxyl-terminal hydrolase 1295 1603 IPR001394 GO:0004843|GO:0016579
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04519 Viun-Chr3 52939019 52948250 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04519 57 1624 C2H2 Transcription Factor Family AT3G47890 54.562 0.0 1618
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04519 - - gmx:100799759 2763.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04519 3 52939019 52948250 Viun3g04519 3 52939019 52948250 ECH