Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04518 ATGGGGCACAAAAAGCGAAACCCTGCGCCGCGCACGAAACAATCCGCGGCGGCTTCTCCGGCGGTTCAATCCGGCGTCGGCGGAGCCGCTAACGGTGCCACCTCGCCGGACGCTGATGCTAGCAATGTTTCCGATCACAAACCACATAACCCTAGCAAGATCGAATTGGCTCCGCCCCCATCCGAGGGTTCTGAGTACTCCACAATCAAGCTCGAATGCGAGCGTGCTCTCACCACGCTCCGCCGCGGGAACCACAACAAGGCAATGAAGCTGTTGCGGGAGATTTGCGCCAGAGAGGAGGGTTCGCCTCACTCTGCGTTCGTCCACCGAGTTCACAGTCTCATGTGTTTCAAAACGGCAACGGTTATCACCGACCCGAGTTCGAAGCAGCGGCATTTGAAGAACGCGCTCGAGTCAGCGCGCCGAGCGGTGGAGCTTATGCCGAATTCTGTTGAGTACGCGCATTTCCGTGCCACGGTGATGTTGGAGGCGGCAACTGAAGGTAAAGATTACGAAGATGTGGTGCATGAGTGCGAGAGGGGGCTAGCCATCGAGAACCCCAGTGATCCTGCCAAGGAGACGTTGCAGGATGAAAGCGAGCAGAAAGCATCATCTACTGAGGAGCGTATTGCGCATGTGCAGAATGAGTTGAGACAGCTTATTCAGAAGTCAAATATAGCTTCCTTGTCGTCTTGGATGAAGAATTTGAGTAACGGGGAGGAGAGATTTCGGTTTCCGATAAGGAGGACTCCGGAGGACCCGATGGAGGTGAGGCTGGTTCAAACTAGAAGGCCTAATGAAATCAAGAAGGTGACCAAGACGCCCGAGGAAAGACGGAAGGAAATTGAAGTGCGAGTGGCTGCTGCCAGGCTTTTGCAGCAGAAGTCAGAGGCACCACAATCTCCGAATGAAGGAGATAGGGATGACAGACCATTGGATTCATCTGCAGGATCTGGTCAGAGGATTGGTGATAGGAGAAGGCATGGGAATGTGAAAAAGAGTGGCTTTACAGCGGAAAAGATGAAATGGGTACACTCCTATTGGAATTCGGTTACCATGGATAGGAAGAAGGACTTTCTTAGGGTTAAAATTTGTGATCTTAAGTCGCACTATGGGTCTTCGAAGGATACTTTGCCGAATGATATCTTGTCAGAGGCTCTGTCTTATGCTGAGGTCAATAAAAATTGGAAATTCTGGCCTTGCTGCAACTGTGAAGAGAAACATTCCAACCCGGATTCTCACAGGCATCATGTTGTGCAGGAGCATATGGGGAGTCTGTCGCCACAGATGCAGAGACTTCTGCCCCAAAATGTGGATAGTGAATGGATAGAGATGATTCTTAATTGTTCTTGGAAGCCTCTGGATGTCTTAGCTGCAGTTAGAATGCTTGATAATAAAGCAAGGTTCAAAAGTCCATCACTTCCTGAGGATTTGTACTTGGATCATCATACTCTGGACTATAATGTTTGTTTTAAAGAAGCAAGCAGCTCTTACATTGAGAAGGAAAGTTCAGGCGACACTCTTCGTAATTGTTTGGAAGAATGCAATAACCATTGTAAAATTATAGAAAATGATGTAAGAGAAGGTGTTGAAGACCAACTATCTGGGGTTGATCGCATTATTGATTGTTGGCCAGTATCTGATGATCCTGAGCGTGCAAAACTTCTGGGGAAAATTCATGCCATGTTTGAGACTCTTATTAGGCATAAATGTCTTGCTGCTAGTCATCTGAACAAGGTCATACAATTTACCATTGGTGAGATACAGGGTCTCGCTGCTGGTTCTCAACTTCTAAATCATGGCGTGGACCAAACACCAATGTGCATATGCTTTCTAGGACCTTCACAGCTTAAGACAATTTTCCAATTTCTGCAGGAAATATCTCACGCGTGTGGGTTGGCCAGAAATGCTGATAAAGGTAGTAGTCCCACAAATGATTCGCTGAATATCAGTCAGGGTTCCGAGATTAAAGACAAGATTGTACTCGATGGAGATGCATCACGACTCCTACTGGATGAGTGTTTACTGCAATCACAAGTCACTGCTGGTACAAATCAGGGGTCTGTCTTGGATGATGTGACCACCCCAAGGTCTCCAGATGGAATTTCATGCTATAACAATGCTTTACTATCCTGGATATTTTCAAGTTCCGCCATTGGGGATCAAGTGACATCATGGCTGCGGATCAGAGAAGATAAAATAAATAAAGGAAAGGAAATTGTCCAGATGCTTGAGAAAGAGTTTTATAACCTACAGGGCCTATGTGAGAAAAAGGGTGAGCGTTTAAGTTATGAGGAAGCACTGCAAACAGTAGAGGATCTATGTCTTGAAGAAGGTAAGAAGAGGGAAACTGTTGGGGAATTTGTTCAGCGAAGTTATGAATCTGTCTTAAGAAAACGAAGAGAAGAGCTCATTGAGAGTGAGAATGATATGATGTATGTCAGCAATAGGTTTGAGTTGGATGCTATATCAAATGTTTTGCAAGAAGCAGAAGCAAGGAATGTTAATCAATTTGGTTACGAGGAAACTTATGCTGGTGTGACTTCTCAATTATGTGACTTGGAATCTGGTGAAGAAGATGAATGGAGAATGAAGGACTACTTGCATCAAATGGATGGCTGCATAGAAAATGCTATTCAGAAACTGAAGGAGCATTTATCTATAGAGCTTAGCAAAATTGATGCCCGAATAATTAGAAGTGTCACAGAGATGCAGCAATTGGAATTCAAGCTTGGGCCTATTTCCGCTAATGATTATCGAGCAATATTAGTGCCTCTAGTGAAGTCGTACCTAAGGGCACTTTTGGAAGATTTGGCTGAGAAGGATGCAAGAGAGAAGTCTGATGCTGCAAGTGAAGCATTTTTGGCTGAACTTGCTCTAGATTCCAAAAAGACTGTTAAAGGCGGAAGTGAGAACACCAAACATGTCGAGAAAACAAAAGATAGGAAGAAGAATAAAGATCACAGAAAAGCAAGAGATTTGAAGGCCTCCGGTGATCATGTGCAGTTCTCAGTGGGATCTACAATTCCTGATTCCAATCTAGTTGCACCTGAAAGTGACTTCCTAGATCATGAGGCTGTTTCTATGAATGACGATGACTTAGAACAACTCGAAGAGGAATTTAGACGTAAAATTGAGCTAGAAGAGGAGGAAAAGAAGCTTGAAGAAACTTTGGAATTCCAGCGAAGGATAGAAAATGAAGCCAAACAGAGGCATCTTGCAGAGCAACAAAAAAGGTCATCTGGGTTTTACTTAGAAGTGGAAGAAGATCTTCAAGATTTTCAGACAAAGGCAGTTACGGATTCGCTAGATTCATACAAACATGACCAGTTGGTACAGGATAATGGATCCCGAAGTAGTCTGGATGGTGTGCTTATGCCCACAACAAACGGTTCCATTTATTTGCATCAGTCAAAAGTTAAACAATCAGATTTGCCTAATGGAGTTATTCGAGAGAATGGTCTACCTGTGGCTGATCGGCGCACTGGAAAAAAACATAAACGGAGGAATTCCTCCAGACCAGTCGATGGAAAGATTGAATCTTTTTCATCAGAAAAAGAGAATACTGAGGATACACATCCTGAGTCTCACTTGAGAGAGAGATTGAAATTTAATAACAGTCAAGACAATAATAATGTGTGGCAGAATAATGGATCAAATGTGATGATAGAGTTACCTGTTAAAGATGCAGAGGAGGAAAGATTCCAGGCTGATCTTGAAATTGCTGTACGCCAAAGCCTGGACACATTTCAAGCTCGGGGAAATTTGCCTTCGGCTTCCAGTTTAAGGATGTCTCAGAGAGCTTATTCAGTGGTAGATAGTGTTGATTGCCCGCCTATAGAAGACCCAACTGATAATTTGAATGGGGCTACTTTGCTTGGTACTGGACTGAAGAATGAAGTTGGCGAATATAATTGTTTTCTCAATGTTATTATACAGTCATTGTGGCATTTAAGACGCTTTCGAGTGGAATTTCTTGGCAGATCAAGAACAGAGCATGATCATGTGGGCAATCCTTGCGTTGTCTGTGCATTATACGAAATCTTTACTGCACTGGACATTGCATCAAAGGATTCAAGGAGAGAAGCAGTTGCACCTACATCCCTGCGGATAGCTCTAAGTAATCTGTATCCTCACAGTAGTTTCTTCCAGGAGGCTCAGATGAATGACGCTTCTGAGGTACTGGCAGTGATATTTGACTGCCTTCATCGGTCATTTACTCGTGGATCAAGTGTTTCTGATGAAGAATCAGCTGAAAGTAACTGCATGGGATCCTGGGATTGTGCAAATGATAGTTGTATAGCACATTCACTTTTTGGAATGAACATTTTTGAACAAATGAACTGCTATCACTGTGGTCTTGAATCCAGACATATGAAATATACTTCCTTCTTTCACAATATAAATGCCAGTGCTCTGCGTGATATGAAGGAAAAGTCTTCTGCTAGTTTCTTCGATAATCTTTTGAATCTTGTGGAGATGAACCATCAGTTGGCTTGCGATCCAGAAGCTGATGGCTGTGGCAAGCTGAACCACATCCATCACTTTCTCTCAACTCCGCCCCATGTTTTTATGACAGTACTAGGTTGGCAAAATACATGTGAGAGTGCTGATGATATAACAGCAACTCTGGCTGCCCTTAGCACCACAATCAATATCAGTGCCCTTTATGGTGGTTTAAATCTTGAATGCACCCATAACTTGGTGTCAGTGGTTTGCTACTATGGTCAGCACTACCATTGCTTTGCTTATAGCCATGACCATGAACAATGGATTATGTACGATGATAAGACTGTCAAGGTAATTGGTGGATGGGCGGATGTTCTTACAATGTGTGAAAGAGGGCATCTGCAACCTCAGGTTCTTTTCTTTGAAGCTGTAAACTAA 4887 0.4373 MGHKKRNPAPRTKQSAAASPAVQSGVGGAANGATSPDADASNVSDHKPHNPSKIELAPPPSEGSEYSTIKLECERALTTLRRGNHNKAMKLLREICAREEGSPHSAFVHRVHSLMCFKTATVITDPSSKQRHLKNALESARRAVELMPNSVEYAHFRATVMLEAATEGKDYEDVVHECERGLAIENPSDPAKETLQDESEQKASSTEERIAHVQNELRQLIQKSNIASLSSWMKNLSNGEERFRFPIRRTPEDPMEVRLVQTRRPNEIKKVTKTPEERRKEIEVRVAAARLLQQKSEAPQSPNEGDRDDRPLDSSAGSGQRIGDRRRHGNVKKSGFTAEKMKWVHSYWNSVTMDRKKDFLRVKICDLKSHYGSSKDTLPNDILSEALSYAEVNKNWKFWPCCNCEEKHSNPDSHRHHVVQEHMGSLSPQMQRLLPQNVDSEWIEMILNCSWKPLDVLAAVRMLDNKARFKSPSLPEDLYLDHHTLDYNVCFKEASSSYIEKESSGDTLRNCLEECNNHCKIIENDVREGVEDQLSGVDRIIDCWPVSDDPERAKLLGKIHAMFETLIRHKCLAASHLNKVIQFTIGEIQGLAAGSQLLNHGVDQTPMCICFLGPSQLKTIFQFLQEISHACGLARNADKGSSPTNDSLNISQGSEIKDKIVLDGDASRLLLDECLLQSQVTAGTNQGSVLDDVTTPRSPDGISCYNNALLSWIFSSSAIGDQVTSWLRIREDKINKGKEIVQMLEKEFYNLQGLCEKKGERLSYEEALQTVEDLCLEEGKKRETVGEFVQRSYESVLRKRREELIESENDMMYVSNRFELDAISNVLQEAEARNVNQFGYEETYAGVTSQLCDLESGEEDEWRMKDYLHQMDGCIENAIQKLKEHLSIELSKIDARIIRSVTEMQQLEFKLGPISANDYRAILVPLVKSYLRALLEDLAEKDAREKSDAASEAFLAELALDSKKTVKGGSENTKHVEKTKDRKKNKDHRKARDLKASGDHVQFSVGSTIPDSNLVAPESDFLDHEAVSMNDDDLEQLEEEFRRKIELEEEEKKLEETLEFQRRIENEAKQRHLAEQQKRSSGFYLEVEEDLQDFQTKAVTDSLDSYKHDQLVQDNGSRSSLDGVLMPTTNGSIYLHQSKVKQSDLPNGVIRENGLPVADRRTGKKHKRRNSSRPVDGKIESFSSEKENTEDTHPESHLRERLKFNNSQDNNNVWQNNGSNVMIELPVKDAEEERFQADLEIAVRQSLDTFQARGNLPSASSLRMSQRAYSVVDSVDCPPIEDPTDNLNGATLLGTGLKNEVGEYNCFLNVIIQSLWHLRRFRVEFLGRSRTEHDHVGNPCVVCALYEIFTALDIASKDSRREAVAPTSLRIALSNLYPHSSFFQEAQMNDASEVLAVIFDCLHRSFTRGSSVSDEESAESNCMGSWDCANDSCIAHSLFGMNIFEQMNCYHCGLESRHMKYTSFFHNINASALRDMKEKSSASFFDNLLNLVEMNHQLACDPEADGCGKLNHIHHFLSTPPHVFMTVLGWQNTCESADDITATLAALSTTINISALYGGLNLECTHNLVSVVCYYGQHYHCFAYSHDHEQWIMYDDKTVKVIGGWADVLTMCERGHLQPQVLFFEAVN 1628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04518 1628 PANTHER UBIQUITIN SPECIFIC PROTEINASE 1 1627 - -
Viun3g04518 1628 MobiDBLite consensus disorder prediction 191 208 - -
Viun3g04518 1628 MobiDBLite consensus disorder prediction 966 997 - -
Viun3g04518 1628 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1295 1627 IPR028889 -
Viun3g04518 1628 Gene3D Tetratricopeptide repeat domain 65 222 IPR011990 GO:0005515
Viun3g04518 1628 MobiDBLite consensus disorder prediction 301 333 - -
Viun3g04518 1628 MobiDBLite consensus disorder prediction 1 66 - -
Viun3g04518 1628 MobiDBLite consensus disorder prediction 183 208 - -
Viun3g04518 1628 MobiDBLite consensus disorder prediction 291 333 - -
Viun3g04518 1628 Pfam Protein of unknown function (DUF629) 344 877 IPR006865 -
Viun3g04518 1628 Gene3D Cysteine proteinases 1286 1626 - -
Viun3g04518 1628 MobiDBLite consensus disorder prediction 1144 1217 - -
Viun3g04518 1628 Pfam Protein of unknown function (DUF627) 75 186 IPR006866 -
Viun3g04518 1628 MobiDBLite consensus disorder prediction 1173 1204 - -
Viun3g04518 1628 Coils Coil 1030 1071 - -
Viun3g04518 1628 CDD Peptidase_C19 1386 1625 - -
Viun3g04518 1628 Coils Coil 196 223 - -
Viun3g04518 1628 SUPERFAMILY Cysteine proteinases 1295 1625 IPR038765 -
Viun3g04518 1628 Pfam Ubiquitin carboxyl-terminal hydrolase 1296 1604 IPR001394 GO:0004843|GO:0016579
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04518 Viun-Chr3 52939019 52948250 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04518 57 1625 C2H2 Transcription Factor Family AT3G47890 54.625 0.0 1618
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04518 - - gmx:100799759 2770.34