Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04517 ATGACCCTTAAGGGTGGCACCACCCAAGCCTGTGCGGCATGCAAACATCAGAGAAGAAAATGCACTTCTGAATGCCTTCTTGCACCCTACTTCCCCGCAGACCAACCCAAGGTTTTTCTCAATGTCCACAGGCTTTTTGGAGTCAGCAACATCGTTAAGATATTGAAGATTTTGGACCCTAACCAGAAGAAAATAGCCATGGACTCTATCATCATTCAAGCAAATTACAGGGATAAGTACCCTGTGAATGGCTGTTGGGAAGAGATTTGTAGGTTACAATACCAAATATGGGTTGCAGAAGAAGAACTTCATGCAGTTTATCAACAGCTTCAGATATGTAGACAGCAACAGCATCACCAACCTCCTTCCATGCCCGATGATGTTACTTCACAATTAGAATTGGGCATGGCACCATGTACTAACAGTAATGCACTCCCATTGTTTAATCATCATACGCCACAACCAAACACTTACAACAATAATGTCACTGCATTCTCTGTGTCGCAGCAACATTCCTATTCCAACAGTAACAGTATGGATTATAGCTCCCTCTACTTAGATTCCAAGGATAATGCCATGAATAATAATCCTTTGTGGGTTCAGTACCCCTCTTCAAAGAATGATAATTCCGTAGGAATGCAAACTCCCATGCTTAATTCTTCGCAGCCATTGCCCATCCAACAAAATGTTGTTGAGGATTTTGTTGACATGCCTCCCATTTTTGATTCACTTGATGATAGACAATCCTACGTTTATTCCAAGGAAGCTTACGAGTCAAGTTCAGAGAAATCACTGAAAGATATAAGAAAGTGCACAGAACATGTTTCTGAGAATGAATTGAAGAATGCTGCTGCTTGCTTTAGCCTTACCAGTGTCAATTAA 882 0.4127 MTLKGGTTQACAACKHQRRKCTSECLLAPYFPADQPKVFLNVHRLFGVSNIVKILKILDPNQKKIAMDSIIIQANYRDKYPVNGCWEEICRLQYQIWVAEEELHAVYQQLQICRQQQHHQPPSMPDDVTSQLELGMAPCTNSNALPLFNHHTPQPNTYNNNVTAFSVSQQHSYSNSNSMDYSSLYLDSKDNAMNNNPLWVQYPSSKNDNSVGMQTPMLNSSQPLPIQQNVVEDFVDMPPIFDSLDDRQSYVYSKEAYESSSEKSLKDIRKCTEHVSENELKNAAACFSLTSVN 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04517 293 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Viun3g04517 293 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 159 - -
Viun3g04517 293 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04517 Viun-Chr3 52929731 52931175 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04517 1 256 AS2 family AT3G47870 39.286 6.14e-48 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Viun3g04517 LOB 1.8e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04517 - - lang:109357116 368.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04517 3 52929731 52931175 Viun3g04517 3 52929731 52931175 ECH