Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04516 ATGGACGACGGCGATCCTTCCCTGTCCGATAAAGAGGAGGAGAACGATGAGGAAGACGTGGCGGACATTCTGTTGCGAATTCCGATCGTCGATGCTCCCATACTCGTCTTTGTTTGCTTCCACAAGGCTTTTCGCTCTGAACTCGATCACCTTCGTCTCTTGGCGGAAACGGCGTCGTTGGAGAACGAGCCACGCCGTTGCCGGCAACTGATCCTTCAGCTTCAACGTAGGTTCCAGTTTCTGAAATTAGCACATAAGTATCACTGTGCTGCGGAAGACGAGGTTATCTTTCTTGCACTGGATGCTCATGTGAAAAATGTCGTTTGTACATATTCGCTTGAACATAACAGCACCTCAGACCTTTTTGGATCTGTTTTCCACTTCTTGGAAGAGCTGATGGTTCCTAAAGAGAATATTTCGAAGTTGTTCCAAGAACTTGTGTACTGTATTGGTATCTTGCAAACCTACATCCACAAACATATGCTGAAAGAAGAAAAACAGGTTTTTCCCCTGTTGATGGAGAAATTATCAACTGAAGAACAGGCCTCACTTGTGTGGCAATTCATATGTAGTGTTCCTATAATGTTGCTGGAGGAAATTTTGCCATGGATGGTATCCTTCCTTTCTGCAAGTAAGCAGTCAGAAGTTACTCAGTGTTTAAATGAAATTGCACCAATGGAAAAAGCACTGCAAGAGGTTTTGGTTTCTTGGCTTAGAAGCAACAAACAAACCATTACTGAGACCTGTTTTCAGAGTGGAGAATTTCAAGGTGTTGAGGGTTTCCTACATATAGAAAGATCACTAGAGCTGAGTTCTAATAGGAAAACCGAAGAAACTTCAAATCTTATGGAAGATAATGGCCGAGAAATAGAAGATGGAGATGGGGCCAACCAGGTTAATGTCCTTCATTTTTGGCATAATGCCATCAAGAAAGATTTGAAAGAAATTCTGAAAGAACTTTACCTACTAAGAAAATCCAGCTGTTTTCAGAATTTAGACTCAGTACTTATCCAACTAAAATTCTTTGCCGATGTCCTCATCTTCTACAGCAATGCTCAGAAGAAATTCTTTCATCCTGTACTGAGTAAACATGCTTATGGCTGGTTGTCCAAGTCAATTGAACAATTTCTCAGTGAAAGTAACATTGAAGATATACAACAGCTGCTATTCTATAACTCAGAAAGTGGAATACCTTTGACCAAGTTCTTAGAGAAGCTTTGCCGAAAACTTGAATCATTTGTGTCAGGAGTCAACAAACAATTTGCTTTTCAAGAAAATGAGGTGTTTCCCATATTTAGAAAGAACTGCAGAAATGGAATGCAAGAGAGACTTCTAAGCTTGAGCCTACATATGATGCCTCTGGGGTTGCTCAAATGTGTTATAACTTGGTTTTCGGTTCGATTGTCTGAAAAGGAGTCCAGGTCCATTCTCTATTGCATAAAGAAAGGAAACAATTCAGTCTGTAAAGCTTTTTCATCACTGTTACATGAGTGGTTCCGCATTGGCTATTCAGGTAAAACCTCTATTGAAAAATTCAGACTAGACTTGCAACACATGTTCAAAAGAAGATGCTTTATTTCACCTGAACAAATTAAGGAAGCTCATGGATTTTCTTTCTTAAATTCTGAGAAGCAGCTTTATGAAGTCTCTGACCAGAATTCTTTGCCCTGTTCTTCCTCGTCTGGATCCAGTAATGTAAACAAGTATGAGATACCATACTCTATAGGAATTAATCTGCACATATTTTTTCCTGCCACAGTTGGGAAGTTATATCAGTATCCTGCATTACATGCAGCAGAACGATCTTCTATTTCCTTTCTTGAAGATCCGAAACCAATTGACCTAATATTTTTCTTTCACAAAGCTATCAAGAAAGATTTGGAGTTCCTAGTTCTTGGCTCAGCCCAGCTAGAAAAGAATGATAAGTTGCTTATGGATTTCCAAAAACGATTCCATCTCATATATTTTCTTCATCAAATCCACAGTGATGCTGAAGATGAGATAGTTTTTCCAGCCTTGGAGGCAAGAGGAAAACTAAAAAACATTAGCCATGCCTACACTTTTGATCACAAACATGAAGTTGAACACTTCAATAAAATATCTCACATCCTTGATAAGATGTCTAGATTACATCTTTCAGTTTCTACAACCGATTCAAATATAAAGGAGATGGGACTGATGAGGTATCAGCATTTATGCAGGAAGCTGCAAGAAATGTGCAAATCAATGCATACATCCCTTTCCAATCATATAAACCGCGAGGAAATAGAAATTTGGCCTATAATTAGAAAATTCTTCACAAATCAGGAGCAAGGGAAGATCTTGGGATGCATGCTTGGAAGAATAAAAGCAGAAATATTACAAGATATGATACCTTGGCTAATGGCATCTTTGACACAGGAAGAACAACACGTTTCAATGTTCTTATGGTCCATGGCTACTAAAAATACAATGTTTGGTGAATGGTTGGGTGAATGGTGGGATGGGTACAGTTTAGCTAAGGTAACGGAGGGCTCAAACGATGCCCGTCCTCAGCCTGTTGAGCCAATGGAGATCATATCCAAATATTTATCTGAAGAAATTCTAAATAAATTGCAAGAAGAATCATCTGCCAACAAAAGCATAAATTTTTTGGAGAAGGATCGTATTGGTGATAATGTTAGGCTATCTAACTGCAACCACAATGATAAAGTTAAGGTTCATAATGCAGAAGAAAAAGATAATCAATGTTTAAAAAGAACAAATCAAGTTTATGATCACCACAAACATGCTTGCAATGAGGTAGCAGATTTCATAAATCCGGTAGTCAATGAAGGTAAGTCGTCTAAGCTCTGTGACGAGTCTGGGCGTTATGACCGACTTTTGAAATTGAGCCAAGATGATTTGGAGACTGTGATAAGAAGGGTGTCTCGTGACTCTTGCTTAGATCCTCAGAAAAAGTCGTACATAATACAGAATCTACTGATGAGCCGTTGGATTATTAGCCAGCAGATCTCTTCTACAGAAGTCAGTATAAAAAATGATGAACCGGAATTTCCTGGGAAGCATCCATCGTACAGGGATCCTCTCAAGCTAATCTACGGATGTAAACACTACAAGAGGAATTGTAAGCTTTTTTCTCCATGTTGCAACCAACTTCATACCTGCATACATTGTCATAACGACGAATCAGATCATTCAATTGATAGAAAATCTATTACAAAGATGATGTGTATGAAGTGTTTGACGATTCAACCAATCAGTGCCACATGCTCAACAATTTCTTGCAATTTATCGATGGCAAAATATTACTGCAGAATCTGCAAATTATTTGATGATGAAAGGGAAATCTACCATTGTCCTTACTGTAACCTGTGTCGAGTTGGAAAGGGTTTGGGTGTAGACTACTTTCACTGTATGAATTGCAATGCTTGTATGGCCCGTTCTCTTATGGCGCATACATGCAGGGAGAAACATTTAGAGGACAACTGTCCAATTTGTCATGAATATATCTTCACATCCTGCTCTCCTGTAAAAGCCCTCCCATGTGGTCATGTGATGCACTCAACATGTTTTCAGGAATACACAAGCTTTAATTATATCTGCCCCATATGTAGCAAGTCACTTGGAGACATGCAGGTATATTTTAGGATGTTAGATGCGTTATTGGCTGAAGAGAGTATTTCCGATGAGATGTCAGGTCAAACTCAGGTTATATTATGTAATGACTGTGAAAAGAAAGGATCAAGTCCCTTCCACTGGCTCTACCACAAATGCCCTAGCTGTGGTTCCTACAACACCAGAGTTCTATGA 3792 0.3911 MDDGDPSLSDKEEENDEEDVADILLRIPIVDAPILVFVCFHKAFRSELDHLRLLAETASLENEPRRCRQLILQLQRRFQFLKLAHKYHCAAEDEVIFLALDAHVKNVVCTYSLEHNSTSDLFGSVFHFLEELMVPKENISKLFQELVYCIGILQTYIHKHMLKEEKQVFPLLMEKLSTEEQASLVWQFICSVPIMLLEEILPWMVSFLSASKQSEVTQCLNEIAPMEKALQEVLVSWLRSNKQTITETCFQSGEFQGVEGFLHIERSLELSSNRKTEETSNLMEDNGREIEDGDGANQVNVLHFWHNAIKKDLKEILKELYLLRKSSCFQNLDSVLIQLKFFADVLIFYSNAQKKFFHPVLSKHAYGWLSKSIEQFLSESNIEDIQQLLFYNSESGIPLTKFLEKLCRKLESFVSGVNKQFAFQENEVFPIFRKNCRNGMQERLLSLSLHMMPLGLLKCVITWFSVRLSEKESRSILYCIKKGNNSVCKAFSSLLHEWFRIGYSGKTSIEKFRLDLQHMFKRRCFISPEQIKEAHGFSFLNSEKQLYEVSDQNSLPCSSSSGSSNVNKYEIPYSIGINLHIFFPATVGKLYQYPALHAAERSSISFLEDPKPIDLIFFFHKAIKKDLEFLVLGSAQLEKNDKLLMDFQKRFHLIYFLHQIHSDAEDEIVFPALEARGKLKNISHAYTFDHKHEVEHFNKISHILDKMSRLHLSVSTTDSNIKEMGLMRYQHLCRKLQEMCKSMHTSLSNHINREEIEIWPIIRKFFTNQEQGKILGCMLGRIKAEILQDMIPWLMASLTQEEQHVSMFLWSMATKNTMFGEWLGEWWDGYSLAKVTEGSNDARPQPVEPMEIISKYLSEEILNKLQEESSANKSINFLEKDRIGDNVRLSNCNHNDKVKVHNAEEKDNQCLKRTNQVYDHHKHACNEVADFINPVVNEGKSSKLCDESGRYDRLLKLSQDDLETVIRRVSRDSCLDPQKKSYIIQNLLMSRWIISQQISSTEVSIKNDEPEFPGKHPSYRDPLKLIYGCKHYKRNCKLFSPCCNQLHTCIHCHNDESDHSIDRKSITKMMCMKCLTIQPISATCSTISCNLSMAKYYCRICKLFDDEREIYHCPYCNLCRVGKGLGVDYFHCMNCNACMARSLMAHTCREKHLEDNCPICHEYIFTSCSPVKALPCGHVMHSTCFQEYTSFNYICPICSKSLGDMQVYFRMLDALLAEESISDEMSGQTQVILCNDCEKKGSSPFHWLYHKCPSCGSYNTRVL 1263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04516 1263 Gene3D - 1228 1263 - -
Viun3g04516 1263 Pfam Hemerythrin HHE cation binding domain 41 172 IPR012312 -
Viun3g04516 1263 CDD Hr-like 36 170 - -
Viun3g04516 1263 ProSiteProfiles Zinc finger CTCHY-type profile. 1093 1156 IPR017921 -
Viun3g04516 1263 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1150 1201 IPR013083 -
Viun3g04516 1263 CDD RING-H2_Pirh2-like 1156 1199 - -
Viun3g04516 1263 Pfam Ring finger domain 1155 1198 IPR001841 -
Viun3g04516 1263 SUPERFAMILY Zinc hairpin stack 1094 1149 IPR037275 -
Viun3g04516 1263 SUPERFAMILY CHY zinc finger-like 1020 1085 IPR037274 GO:0008270
Viun3g04516 1263 ProSiteProfiles Zinc finger RING-type profile. 1157 1199 IPR001841 -
Viun3g04516 1263 Coils Coil 1259 1263 - -
Viun3g04516 1263 SMART ring_2 1157 1198 IPR001841 -
Viun3g04516 1263 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 656 1263 - -
Viun3g04516 1263 Gene3D nmb1532 protein domain like 608 779 - -
Viun3g04516 1263 Gene3D nmb1532 protein domain like 32 190 - -
Viun3g04516 1263 Gene3D nmb1532 protein domain like 295 446 - -
Viun3g04516 1263 Pfam Zinc-ribbon 1204 1261 IPR039512 -
Viun3g04516 1263 Pfam CHY zinc finger 1029 1103 IPR008913 GO:0008270
Viun3g04516 1263 CDD Hr-like 614 760 - -
Viun3g04516 1263 FunFam Zinc finger protein-related isoform 1 1152 1201 - -
Viun3g04516 1263 ProSiteProfiles Zinc finger CHY-type profile. 1022 1091 IPR008913 GO:0008270
Viun3g04516 1263 SUPERFAMILY RING/U-box 1147 1203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04516 Viun-Chr3 52917913 52928328 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04516 32 846 C2H2 Transcription Factor Family AT3G18290 33.296 1.11e-126 420
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04516 K16276 - gmx:100802706 2258.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04516 3 52917913 52928328 Viun3g04516 3 52917913 52928328 ECH