Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04507 ATGGAACCTCCCCTCATCAACGACGCCACATTCTCTTCGGCCAACCCTTCCTTGTCCGAGATTTGGCCCTCGCAATTCCCTTCCTCCAACAAGAGACCCTCTTCTCTTCTTCTCCACAATCACTCTCCCAACAGTAACAAACACGTTAAGCTCTCACCATCACCCTCAGAGACACACCAAAACGCTGCGTTGCAGCCTCCTCAACCAGACGCCACTTCCGTCGCCGCCGCTCACAAGTCACCGCTTCAAACTCCCAAACCCAAGCTGGATTACATACACGTGCGAGCAAGAAGAGGCCAAGCCACCGATAGCCACAGTCTCGCCGAAAGAGCTCGAAGGGAAAAGATAAGTGAGAGGATGAAAATTCTTCAAGATTTAGTCCCTGGCTGCAGCAAGGTAATCGGTAAAGCGCTTGTCCTGGATGAGATTATTAACTACATCCAGTCCCTGCAGCGTCAGGTTGAGTTTCTTTCAATGAAGCTTGAGGCGGTTAATTCGAGATTGAGTATTAGCCCTTCTATTGAATCTTTTCCCTCAAAAGAAGTTGGCACTCAGCCATTTGACCTTTCAGGAATAATATTTGGATCACAACCGGCCAGGGGATTTGCTCAAGGATCACAAGCTGGATGGCTGCATATGCAGATAGCTGGTGGTTTTGAGAAAGTAACATAA 672 0.4866 MEPPLINDATFSSANPSLSEIWPSQFPSSNKRPSSLLLHNHSPNSNKHVKLSPSPSETHQNAALQPPQPDATSVAAAHKSPLQTPKPKLDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCSKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRLSISPSIESFPSKEVGTQPFDLSGIIFGSQPARGFAQGSQAGWLHMQIAGGFEKVT 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04507 223 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 100 150 IPR011598 GO:0046983
Viun3g04507 223 Pfam Helix-loop-helix DNA-binding domain 104 151 IPR011598 GO:0046983
Viun3g04507 223 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 98 168 IPR036638 GO:0046983
Viun3g04507 223 Coils Coil 147 167 - -
Viun3g04507 223 Gene3D - 97 173 IPR036638 GO:0046983
Viun3g04507 223 FunFam Basic helix-loop-helix transcription factor 97 169 - -
Viun3g04507 223 SMART finulus 106 156 IPR011598 GO:0046983
Viun3g04507 223 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 39 193 IPR024097 GO:0006355
Viun3g04507 223 MobiDBLite consensus disorder prediction 23 68 - -
Viun3g04507 223 CDD bHLH_AtBPE_like 90 173 - -
Viun3g04507 223 MobiDBLite consensus disorder prediction 23 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04507 Viun-Chr3 52825890 52829100 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04507 1 38 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 56.098 4.53e-06 44.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun3g04507 HLH 2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04507 - - vra:106766826 407.142