Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04494 ATGGTGTCAACAAATGAGAAGAAGACCAACCTCGCCAAACTCATCATCCCTTCTTCTTCATCTTCTCCCTCCCCATCCCCATCCATCACAAGCCCACACGTCATTCACAGTAGGTCCCACTCCTTTGTGGGTCCCTCCCCCCGCATCGATCCCTCCTCAACCCCTCTCTTCTTCCTCCAAGAGGTCGACGACGACGACGACGAAGACGAAGACGAAGAAAAGGAACCTCTTTCTTCTGACCCTGTTAAGATTGGACCTTCCGATTTTCATATTCTTCGTGTTGTAGGGCAGGGTGCCTTTGGCAAGGTCTTTCTCGTCAGAAAAAAAGGAAATGGCTTCGATGGTGATGCTGATGCTGATGGCGATGGGGTCTTCGCCATGAAGGTCATGAGAAAGGACATCATCATAAAGAAAAACCACGTTGATTACATGAAAGCGGAGAGGGATATTCTCACTAAAGTCCTTCACCCTTTCATTGTTCAGCTACGTTACTCTTTTCAGACCAAATCTAAGTTATATTTGGTGTTGGATTTTGTAAACGGAGGGCATCTCTTCTTTCATCTGTATCGCCAGGGTATCTTCAGTGAGGATCAGGCAAGGCTTTACACTGCTGAGATAGTGTCTGCAGTTTCACATCTTCACAGCAAAGGCATCGTGCATCGGGATCTTAAGCCTGAAAACATTCTAATGGACTCTCATGGGCATGTCATGCTCACTGATTTTGGAATGTCAAAAGAGATTGATGAATTGGGAAGATCCAACTCTCTTTGTGGGACCGTGGAATATATGGCTCCTGAAATTCTTCAGGCTAAAGGCCATAACAAGGATGCGGATTGGTGGAGTGTTGGTATCCTGTTGTATGAAATGCTAACAGGGAAGGCACCGTTCACACACACTAACAGAAAGAAACTTCAGGAGAAAATTATTAAAGAGAAAGTTAAACTTCCACCATTCCTTACCAGTGAAGCTCACTCATTACTCAAAGGATTGCTGCAAAAGGATCCAACAACAAGGTTAGGACACGGGCCAAATGGAGATGAGCAGATCAAAAGTCATAAATGGTTTAGGTCAATCAATTGGAAAAAATTGGAGGCAAGAGAAGTGGAACCAAAGTTTAAACCAGATGTGTCTGGGAAAGATTGTACAGCTAATTTTGACAAATGTTGGACAGCAATGCCCCCTAATGACTCACCAGCAACCACACCTACAGCAGGTGACCATTTCCAGGGCTATACTTATGTGGCACCCAACCCTTGGCTTTCTTCTCGTTCACTACAATGA 1281 0.4489 MVSTNEKKTNLAKLIIPSSSSSPSPSPSITSPHVIHSRSHSFVGPSPRIDPSSTPLFFLQEVDDDDDEDEDEEKEPLSSDPVKIGPSDFHILRVVGQGAFGKVFLVRKKGNGFDGDADADGDGVFAMKVMRKDIIIKKNHVDYMKAERDILTKVLHPFIVQLRYSFQTKSKLYLVLDFVNGGHLFFHLYRQGIFSEDQARLYTAEIVSAVSHLHSKGIVHRDLKPENILMDSHGHVMLTDFGMSKEIDELGRSNSLCGTVEYMAPEILQAKGHNKDADWWSVGILLYEMLTGKAPFTHTNRKKLQEKIIKEKVKLPPFLTSEAHSLLKGLLQKDPTTRLGHGPNGDEQIKSHKWFRSINWKKLEAREVEPKFKPDVSGKDCTANFDKCWTAMPPNDSPATTPTAGDHFQGYTYVAPNPWLSSRSLQ 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04494 426 Gene3D Phosphorylase Kinase; domain 1 87 397 - -
Viun3g04494 426 SUPERFAMILY Protein kinase-like (PK-like) 87 419 IPR011009 -
Viun3g04494 426 FunFam Non-specific serine/threonine protein kinase 87 201 - -
Viun3g04494 426 FunFam Non-specific serine/threonine protein kinase 179 374 - -
Viun3g04494 426 Pfam Protein kinase C terminal domain 376 413 IPR017892 GO:0004674|GO:0005524|GO:0006468
Viun3g04494 426 ProSitePatterns Serine/Threonine protein kinases active-site signature. 218 230 IPR008271 GO:0004672|GO:0006468
Viun3g04494 426 ProSiteProfiles Protein kinase domain profile. 89 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g04494 426 Gene3D Transferase(Phosphotransferase) domain 1 179 374 - -
Viun3g04494 426 MobiDBLite consensus disorder prediction 1 57 - -
Viun3g04494 426 MobiDBLite consensus disorder prediction 64 83 - -
Viun3g04494 426 SMART serkin_6 89 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g04494 426 Pfam Protein kinase domain 89 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g04494 426 PANTHER RIBOSOMAL PROTEIN S6 KINASE 64 417 - -
Viun3g04494 426 MobiDBLite consensus disorder prediction 1 37 - -
Viun3g04494 426 ProSitePatterns Protein kinases ATP-binding region signature. 95 128 IPR017441 GO:0005524
Viun3g04494 426 SMART pkinase_C_6 356 415 IPR000961 GO:0004674|GO:0005524|GO:0006468
Viun3g04494 426 ProSiteProfiles AGC-kinase C-terminal domain profile. 356 423 IPR000961 GO:0004674|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04494 Viun-Chr3 52701710 52704903 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04494 16 416 AGC Kinase Gene Family AT3G08720 59.670 9.30e-179 505
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC-Pl Viun3g04494 Pkinase 9.7e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04494 K04688 - gmx:100798259 704.131