Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04490 ATGTCTCGGGCCTGTGCCGCTACAGACTCCGTCGCCTCCGGCGAGATCATGCTGTTCGGGGTTCGAGTCGTCGTCGATTCCATGAGGAAGAGCGTCAGTATGAACAACCTCTCACAGTACGAGCATCCACATGATTCTAACAACAGCAGCAACAGTAACAATAACAAAAAGGATGTTCTCGCAGCTGCTGATTATGCCTCAGCCGATGACGCTGTTCCTCATAACACCGGCCGTCAGCGCGAGCGCGAGCGGAAGCGAGGAGTTCCGTGGACGGAGGAAGAACACAAACTGTTTTTGGTTGGATTGCAGAAGGTAGGGAAAGGTGATTGGAGAGGAATCTCCAAAAACTACGTGAAAACGCGAACTCCGACGCAGGTTGCGAGCCATGCTCAGAAGTACTTCCTCCGAAGAAGCAACCTGAATCGCCGTCGCCGTAGATCTAGCCTATTTGACATCACCACCGACACTGTCTCTGCAATTCCAATGGAGGAAGAACAGGTCCAGAATCAAGACACCCTGTCTCATTCGCAACCTGTGTGCCCAGCAGTTCCTGAAACTAACAAAAGTGGATTTCCTATGATGCCAGTTTATCAATTTGGGGTTGGTTCTGGGGTGATTGCAGTCCAAGGTGGAAAACCATTAGAAGAGCTCACACTAGGACAAGGAAACATAGAACACAATGTGCCGATCAATCTGGTCCATTCAATTCCTGTTGTCGCAGATCCTAAAGCCTCCACAGTGTCTGATATCATCACCCCAAGTTCTAGCTCTGCTGTTGACCCACCCACACTGTCCTTGGGGCTATCCTTCTCTTCTGACCAAAGGCAAACATCATCAAGACATTCTGGTTTACATGCCATGCCATGTTTCAGCAATGGAGATAGCATCATTAGTGTTGCTTAA 903 0.4939 MSRACAATDSVASGEIMLFGVRVVVDSMRKSVSMNNLSQYEHPHDSNNSSNSNNNKKDVLAAADYASADDAVPHNTGRQRERERKRGVPWTEEEHKLFLVGLQKVGKGDWRGISKNYVKTRTPTQVASHAQKYFLRRSNLNRRRRRSSLFDITTDTVSAIPMEEEQVQNQDTLSHSQPVCPAVPETNKSGFPMMPVYQFGVGSGVIAVQGGKPLEELTLGQGNIEHNVPINLVHSIPVVADPKASTVSDIITPSSSSAVDPPTLSLGLSFSSDQRQTSSRHSGLHAMPCFSNGDSIISVA 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04490 300 Pfam Myb-like DNA-binding domain 89 134 IPR001005 -
Viun3g04490 300 CDD SANT 89 134 IPR001005 -
Viun3g04490 300 PANTHER TRANSCRIPTION FACTOR KUA1 2 240 - -
Viun3g04490 300 SMART sant 86 136 IPR001005 -
Viun3g04490 300 SUPERFAMILY Homeodomain-like 84 139 IPR009057 -
Viun3g04490 300 MobiDBLite consensus disorder prediction 65 88 - -
Viun3g04490 300 ProSiteProfiles Myb-like domain profile. 82 134 IPR001005 -
Viun3g04490 300 MobiDBLite consensus disorder prediction 252 285 - -
Viun3g04490 300 Gene3D - 88 140 - -
Viun3g04490 300 MobiDBLite consensus disorder prediction 74 88 - -
Viun3g04490 300 FunFam transcription factor MYB1R1 88 139 - -
Viun3g04490 300 NCBIfam myb-like DNA-binding domain, SHAQKYF class 85 136 IPR006447 GO:0003677
Viun3g04490 300 MobiDBLite consensus disorder prediction 252 286 - -
Viun3g04490 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 82 138 IPR017930 -
Viun3g04490 300 ProSiteProfiles SANT domain profile. 85 138 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04490 Viun-Chr3 52650906 52652881 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Viun3g04490 Myb_DNA-binding 3.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04490 - - gmx:780536 421.394