Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04484 ATGGCCATCACCGGTGAAATTTTCCGGCAAAACCTAACGGAGTTTCTCGAGGAGTCTCCTTCTGGCTCGCCGGAGCTTCACGTTCTTGCCGTTGATGACAGCCTCGTTGATCGCAAGGTCATTGAGCGGTTGCTCAAGATTTCTTCCTGCAAAGTGACGGTTGTGGAGAGTGGAACTCGTGCTCTTCAGTATTTGGGCTTGGACGGAGAGGCCGGTTCTCTCGGGTTCGATAGTGTGAAGGTTAATCTCATAATGACGGATTATTCCATGCCGGGGATGACAGGATACGAATTACTCAAGAAAATCAAGGAGTCTTCCGTGTTTAGAGAGATTCCAGTGGTGATCATGTCATCGGAGAATGTTTTGACTCGAATTGATAGGTGTATGGAGGAAGGAGCAGAGGAGTTTCTGTTGAAACCTGTAAAACTGTCAGATGTAAGACGTTTGAAAGATTTCATCATGAGAGGGAAAGCGAAGGAGGTTGAGAAAAAATCTCTGAAAAGAATGCGGTCAATTGATTGCAGTCCACCTCTCTCTGCAACATACTCATCCATCTCTCTTCCATGCGATCCATCAACATCATTGCTCTCAACATTATCCTCAAAGAAGGCTAGATTGTGA 621 0.4589 MAITGEIFRQNLTEFLEESPSGSPELHVLAVDDSLVDRKVIERLLKISSCKVTVVESGTRALQYLGLDGEAGSLGFDSVKVNLIMTDYSMPGMTGYELLKKIKESSVFREIPVVIMSSENVLTRIDRCMEEGAEEFLLKPVKLSDVRRLKDFIMRGKAKEVEKKSLKRMRSIDCSPPLSATYSSISLPCDPSTSLLSTLSSKKARL 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04484 206 SMART REC_2 26 150 IPR001789 GO:0000160
Viun3g04484 206 CDD REC_typeA_ARR 28 149 - -
Viun3g04484 206 Gene3D - 26 193 - -
Viun3g04484 206 Pfam Response regulator receiver domain 28 147 IPR001789 GO:0000160
Viun3g04484 206 SUPERFAMILY CheY-like 25 157 IPR011006 -
Viun3g04484 206 PANTHER TWO-COMPONENT RESPONSE REGULATOR 26 166 IPR045279 GO:0009736
Viun3g04484 206 ProSiteProfiles Response regulatory domain profile. 27 154 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04484 Viun-Chr3 52562323 52564427 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04484 5 175 Response Regulator Gene Family AT3G48100 66.667 1.78e-76 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Viun3g04484 Response_reg 1.3e-20 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04484 K14492 - gmx:100796843 342.813