Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04483 ATGGCCATCACCGGTGAAATTTTCCGGCAAAACCTAACGGAGTTTCTCGAGGAGTCTCCTTCTGGCTCGCCGGAGCTTCACGTTCTTGCCGTTGATGACAGCCTCGTTGATCGCAAGGTCATTGAGCGGTTGCTCAAGATTTCTTCCTGCAAAGTGACGGTTGTGGAGAGTGGAACTCGTGCTCTTCAGTATTTGGGCTTGGACGGAGAGGCCGGTTCTCTCGGGTTCGATAGTGTGAAGGTTAATCTCATAATGACGGATTATTCCATGCCGGGGATGACAGGATACGAATTACTCAAGAAAATCAAGCAGGAGTCTTCCGTGTTTAGAGAGATTCCAGTGGTGATCATGTCATCGGAGAATGTTTTGACTCGAATTGATAGGTGTATGGAGGAAGGAGCAGAGGAGTTTCTGTTGAAACCTGTAAAACTGTCAGATGTAAGACGTTTGAAAGATTTCATCATGAGAGGGAAAGCGAAGGAGGTTGAGAAAAAATCTCTGAAAAGAATGCGGTCAATTGATTGCAGTCCACCTCTCTCTGCAACATACTCATCCATCTCTCTTCCATGCGATCCATCAACATCATTGCTCTCAACATTATCCTCAAAGAAGGCTAGATTGTGA 624 0.4599 MAITGEIFRQNLTEFLEESPSGSPELHVLAVDDSLVDRKVIERLLKISSCKVTVVESGTRALQYLGLDGEAGSLGFDSVKVNLIMTDYSMPGMTGYELLKKIKQESSVFREIPVVIMSSENVLTRIDRCMEEGAEEFLLKPVKLSDVRRLKDFIMRGKAKEVEKKSLKRMRSIDCSPPLSATYSSISLPCDPSTSLLSTLSSKKARL 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04483 207 PANTHER TWO-COMPONENT RESPONSE REGULATOR 26 167 IPR045279 GO:0009736
Viun3g04483 207 CDD REC_typeA_ARR 28 150 - -
Viun3g04483 207 ProSiteProfiles Response regulatory domain profile. 27 155 IPR001789 GO:0000160
Viun3g04483 207 SMART REC_2 26 151 IPR001789 GO:0000160
Viun3g04483 207 Gene3D - 26 194 - -
Viun3g04483 207 SUPERFAMILY CheY-like 25 158 IPR011006 -
Viun3g04483 207 Pfam Response regulator receiver domain 28 148 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04483 Viun-Chr3 52562309 52564427 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04483 5 176 Response Regulator Gene Family AT3G48100 66.286 1.13e-74 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Viun3g04483 Response_reg 1e-20 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04483 K14492 - gmx:100796843 338.191