Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04481 ATGGCTTCTTCAGATCCCATCTCTTCCAAACACTACACTTACAACAGAAAACAGAAGTCCTTAGGACTTTTGTGCACCAATTTCTTGAGTCTCTATAACCGAGACACGGTGCACTTAATTGGCCTTGATGACGCCGCCACTCGATTAGGAGTCGAGAGAAGACGGATCTACGACATTGTTAACGTTCTGGAGAGCATTGGGGTTCTATCGAGGAAAGCCAAAAATCAGTATACCTGGAAAGGTTTTGCTGCAATTCCCCTCACCCTTCGGGAGCTAAAAGAAGATGGGCTGAGAGAGAATTCCAGTTCTTTGCGCGGGTCCACTAACGACGACATGGATAAAGTTTCTGATGACGAAGATGATGAAGAAACACAGTCCAATGCCGCAACTGGAAGTCAAAATGACAAGTTGAGCCCTAAATCTACTCAACCCAGATCACTAAAAAATGAAAATCGACGGGAAAAATCTCTGGCTCTGCTGACCCAGAATTTTGTCAAGCTCTTTGTGTGCTCTAATGTTGAGTTGATCTCCCTTGACGAGGCTGCAAAATTATTGCTTGGAGATGCTCATAATACCTCAATAATGAGAACAAAAGTTAGACGCCTATACGACATCGCAAATGTGCTATCCTCCATGAGCCTTATTGAGAAGACCCATACGTCAGATACAAGAAAACCGGCGTTCAGGTGGCTGGGTCCTGAAGGGAAGACATGGAATGAGTCGCTTCACAAATCAAATCAGAACGAGTCTAGAAAAAGGGCGTTTGGGAGTGATATTACAAACATCAGCTTTGAGAGGAATAAGGTGGAATTATTCACAAATGGAGACTTAAATTCGAATCCTAAGAAGCTAAAAGTTGAAAATGATAGAGGGCCGGGTCAGGCAGATGAAAACGATTTAAAACAAGGCAACAAACAAACTCCGAAGAGCTATCAGTTTGGTCCTTTCGCTCCAGCGTGCGTCCCCGGAGTTGGAGCCTCTGGGAATAATAACGTAAAACAGGTGCATGACTGGAACGGTCTAGTAACTGCACATAGCCCTCAGTATCAAAACGAAGCTTTGAGAGATCTCTTTTCCCATTACATGGAGGCATGGAAATCGTGGTACTCTGAGATTGCTGCAAAGAGACCATTAAAAATTTTGTAA 1146 0.4372 MASSDPISSKHYTYNRKQKSLGLLCTNFLSLYNRDTVHLIGLDDAATRLGVERRRIYDIVNVLESIGVLSRKAKNQYTWKGFAAIPLTLRELKEDGLRENSSSLRGSTNDDMDKVSDDEDDEETQSNAATGSQNDKLSPKSTQPRSLKNENRREKSLALLTQNFVKLFVCSNVELISLDEAAKLLLGDAHNTSIMRTKVRRLYDIANVLSSMSLIEKTHTSDTRKPAFRWLGPEGKTWNESLHKSNQNESRKRAFGSDITNISFERNKVELFTNGDLNSNPKKLKVENDRGPGQADENDLKQGNKQTPKSYQFGPFAPACVPGVGASGNNNVKQVHDWNGLVTAHSPQYQNEALRDLFSHYMEAWKSWYSEIAAKRPLKIL 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04481 381 MobiDBLite consensus disorder prediction 126 145 - -
Viun3g04481 381 SMART E2F_TDP_2 152 232 IPR003316 GO:0005667|GO:0006355
Viun3g04481 381 SMART E2F_TDP_2 16 81 IPR003316 GO:0005667|GO:0006355
Viun3g04481 381 SUPERFAMILY "Winged helix" DNA-binding domain 15 79 IPR036390 -
Viun3g04481 381 FunFam E2F transcription factor 8 11 83 - -
Viun3g04481 381 MobiDBLite consensus disorder prediction 282 296 - -
Viun3g04481 381 MobiDBLite consensus disorder prediction 98 151 - -
Viun3g04481 381 PANTHER TRANSCRIPTION FACTOR E2F 9 342 IPR015633 GO:0000978|GO:0006357
Viun3g04481 381 FunFam E2F transcription factor-like E2FE 147 234 - -
Viun3g04481 381 Pfam E2F/DP family winged-helix DNA-binding domain 17 81 IPR003316 GO:0005667|GO:0006355
Viun3g04481 381 Pfam E2F/DP family winged-helix DNA-binding domain 154 232 IPR003316 GO:0005667|GO:0006355
Viun3g04481 381 MobiDBLite consensus disorder prediction 273 309 - -
Viun3g04481 381 Gene3D - 11 83 IPR036388 -
Viun3g04481 381 Gene3D - 147 233 IPR036388 -
Viun3g04481 381 SUPERFAMILY "Winged helix" DNA-binding domain 154 233 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04481 Viun-Chr3 52537512 52541376 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04481 11 378 E2F-DP Transcription Factor Family AT3G48160 53.226 1.82e-128 373
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Viun3g04481 E2F_TDP 3.5e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04481 K09391 - gmx:100795252 658.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04481 3 52537512 52541376 Viun3g04481 3 52537512 52541376 ECH
Viun3g04481 3 52537512 52541376 Viun9g01141 9 9690974 9697707 PCT