Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04463 ATGGCATCATTTGCAGGCACCACCCAGAAGTGCACAGCTTGTGAAAAGAAAGTATATTGGGTGGAACAGCTTACTGCTGACAACAAGGTGTACCATAAATCGTGTTTCAGATGTCACCACTGCAAGGGCACCCTCAAGCTGGGTAATTATTGTTCCTTTGAGGGTGTCCTATACTGCAAGCCCCATTTTGATCAACTGTTTAAGATGACTGGAAGCTTGGACAAAAGTTTTGAAGGTATTCCAAGAATTGCTAGAGTTGAAAGATCTGCAGATCAGGTCCAAATCAACAACAAGGTTTCAAGGTTGTTTTCTGGAACTCAGGAAAAGTGTGTTGTTTGCAAGAAAACAGTGTACCCAATTGAAAAGGTGGCTGTTGATGGAAAATGTTACCACAAATCTTGTTTCAGATGCACCCATGGAGGTTGTGTGATCAGTCCATCAAATTATGTTGCTCATGAACATCTTCTTTATTGCAGACACCACCATACCCAGCTCTTCAAGCAAAAGGGTAACTTCAGCCAATTAGTGAAGCAAGAAAATCTCCAACTCACCACTCAAAACACCACACAACCTGCAACTAATGGCACTGCAAGTCCACCTCATCACTCTTCTTAG 615 0.4244 MASFAGTTQKCTACEKKVYWVEQLTADNKVYHKSCFRCHHCKGTLKLGNYCSFEGVLYCKPHFDQLFKMTGSLDKSFEGIPRIARVERSADQVQINNKVSRLFSGTQEKCVVCKKTVYPIEKVAVDGKCYHKSCFRCTHGGCVISPSNYVAHEHLLYCRHHHTQLFKQKGNFSQLVKQENLQLTTQNTTQPATNGTASPPHHSS 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04463 204 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 37 77 - -
Viun3g04463 204 ProSiteProfiles LIM domain profile. 9 69 IPR001781 -
Viun3g04463 204 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 102 135 - -
Viun3g04463 204 ProSitePatterns LIM zinc-binding domain signature. 11 45 IPR001781 -
Viun3g04463 204 Gene3D Cysteine Rich Protein 5 75 - -
Viun3g04463 204 Gene3D Cysteine Rich Protein 104 174 - -
Viun3g04463 204 ProSiteProfiles LIM domain profile. 108 168 IPR001781 -
Viun3g04463 204 MobiDBLite consensus disorder prediction 185 204 - -
Viun3g04463 204 Pfam LIM domain 11 65 IPR001781 -
Viun3g04463 204 Pfam LIM domain 110 165 IPR001781 -
Viun3g04463 204 FunFam LIM domain and actin-binding 1 104 174 - -
Viun3g04463 204 CDD LIM2_SF3 110 170 - -
Viun3g04463 204 FunFam LIM domain and actin-binding 1 5 75 - -
Viun3g04463 204 PANTHER OS06G0237300 PROTEIN 2 94 - -
Viun3g04463 204 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 136 175 - -
Viun3g04463 204 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 36 - -
Viun3g04463 204 SMART lim_4 109 161 IPR001781 -
Viun3g04463 204 SMART lim_4 10 62 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04463 Viun-Chr3 52343007 52346346 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Viun3g04463 LIM 2.6e-09 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04463 K09377 - gmx:100792627 370.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04463 3 52343007 52346346 Viun3g04463 3 52343007 52346346 ECH
Viun3g04463 3 52343007 52346346 Viun9g01158 9 10019271 10022190 PCT