Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04446 ATGCGCAACATTGAGATTGAAACGAGGAAAAATGGTGATGTGAAGTACTCGTATGAGTCATATCCTCAGTCTCCTTTTTCAGCATACCAAGCTCCTAACGATGGTAACACTGAAGAATCAACTACGCCATCATCTCTGAGCAGAATCAGTCCACTGATTTTGCTGGTCATAATTGTTCTAGCAGTTATCTTCTTCGTGTATGGACTTGTCCATTTGGTTCTATGGTTTTTCATGAAAACACCAACCTCTTCATCAACCTACAACTCCAACAGGTTCCACGACTCCACGCGCTCACGTGTTCTTCAGAGGCAGCTTCAACAACTCTTCCGCTTGCACGATTCGGGTATAGACCAAGCCCTCATAGACGCTCTACCAGTTTTCCATTACCAAGACTTGCTGGGTTCAAAGGAACCGTTTGATTGTGCCGTGTGTTTATGCGAGTTCTCCGAGGACGACAAGCTGAGGTTGCTTCCTATGTGCACACACGCCTTTCACATGACCTGTCTTGACACGTGGCTTCTCTCGAATTCCACGTGTCCTCTTTGCAGGGCTTCTCTCTCCAACTACCTGGAGAATCAAAATCAAAACCAAAATCCTATCTTGTTTAATGTTGGTATTGGCAATTCAAATTCCTTGGCTGTGGGAAGTGGGTTGAGGGGTGAGGAAGAGAACGGGTTTTCAGAAAGTGAAAGATCGGTTGGGAAAAGGGTTTTTTCTGTGAGGCTTGGGAAATTCAGGAACAATGGGATGGAGTTAGAGAGTGGAGATAGTTGTAGCTTGAATGAGAGGAGATGCTACTCCATGGGTTCATATAGGTACGTGGTTCGTGATTTGAATCTGCAAGTGGTTTTGTCTGAATCTGGTGATGTGAAGGGAAAGAGGATAAGCGACTCAACCAAAGGTGAGAGCTTCTCTGTTTCCAAGATATGGCTTTGGTCCAAGAACCCCACACTTCATGCTTCTAATGCACCTTTTCCTTAA 981 0.4495 MRNIEIETRKNGDVKYSYESYPQSPFSAYQAPNDGNTEESTTPSSLSRISPLILLVIIVLAVIFFVYGLVHLVLWFFMKTPTSSSTYNSNRFHDSTRSRVLQRQLQQLFRLHDSGIDQALIDALPVFHYQDLLGSKEPFDCAVCLCEFSEDDKLRLLPMCTHAFHMTCLDTWLLSNSTCPLCRASLSNYLENQNQNQNPILFNVGIGNSNSLAVGSGLRGEEENGFSESERSVGKRVFSVRLGKFRNNGMELESGDSCSLNERRCYSMGSYRYVVRDLNLQVVLSESGDVKGKRISDSTKGESFSVSKIWLWSKNPTLHASNAPFP 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04446 326 CDD RING-H2_EL5-like 140 183 - -
Viun3g04446 326 ProSiteProfiles Zinc finger RING-type profile. 141 183 IPR001841 -
Viun3g04446 326 SUPERFAMILY RING/U-box 120 195 - -
Viun3g04446 326 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 192 IPR013083 -
Viun3g04446 326 Pfam Ring finger domain 140 183 IPR001841 -
Viun3g04446 326 FunFam RING-H2 finger protein ATL46 103 188 - -
Viun3g04446 326 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 44 310 - -
Viun3g04446 326 SMART ring_2 141 182 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04446 Viun-Chr3 52267715 52269064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04446 47 323 C3H Transcription Factor Family AT2G18650 42.169 4.05e-55 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04446 - - vum:124828898 567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04446 3 52267715 52269064 Viun3g04446 3 52267715 52269064 ECH