Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04436 ATGCGATACCATACCATACCTACTTCCCTTTCTAAACATCCAAACATGAAGAACACAAACACTACTGTCACTGCTTCATCAAAACTCGATCGCAAAACCATTGAAAGGAACCGCAGAATCCACATGAAAGCTCTCTGCTTCAAGCTTGTTTCAATTATCCCTTCCAAGTACCTCAAACCCACCAAGGACATGCTTTCCCAGCAGGACCAGCTTGATCTTGCAGCCACTTATATAAAGCATCTGAGAGAAAGAATAGAGAAACTGAAGGGAGAGAAGGAGCAAGCCATGAAAATGATGAGAACCACCCAAACCAATAACGGGATTTTCAGTATTGACTCTGACTTGCCTCTACTTGAGATAAAGGAGTTGGGTTCGGGCATTGAAGTGATGTTGATAAGTGGGGTGAATAAGAACTTCATGCTCTATGAAGTAATTGGTGTCCTTGAGGAAGAGGGTGCCGAAGTTGTCACTGCCAACTTCTCCACTGTTGATAATAAGATCTTTTACACAGTTCATGCTCAGGTTAAAATCTCAAGAGTTGGCGTTGAGCCAACGAGGGTATATCAAAAGCTTCAGGAATTGATTGCACCACTAGAAAGCTGGTAG 606 0.4274 MRYHTIPTSLSKHPNMKNTNTTVTASSKLDRKTIERNRRIHMKALCFKLVSIIPSKYLKPTKDMLSQQDQLDLAATYIKHLRERIEKLKGEKEQAMKMMRTTQTNNGIFSIDSDLPLLEIKELGSGIEVMLISGVNKNFMLYEVIGVLEEEGAEVVTANFSTVDNKIFYTVHAQVKISRVGVEPTRVYQKLQELIAPLESW 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04436 201 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 26 81 IPR011598 GO:0046983
Viun3g04436 201 MobiDBLite consensus disorder prediction 1 21 - -
Viun3g04436 201 FunFam Transcription factor bHLH162 18 108 - -
Viun3g04436 201 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 16 194 - -
Viun3g04436 201 Coils Coil 78 105 - -
Viun3g04436 201 Gene3D - 17 107 IPR036638 GO:0046983
Viun3g04436 201 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 28 101 IPR036638 GO:0046983
Viun3g04436 201 Pfam Helix-loop-helix DNA-binding domain 31 82 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04436 Viun-Chr3 52170338 52171502 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04436 16 195 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 32.984 3.62e-26 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun3g04436 HLH 7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04436 - - vun:114179389 394.815
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04436 3 52170338 52171502 Viun9g01191 9 10887329 10888691 ECH
Viun3g04436 3 52170338 52171502 Viun3g04436 3 52170338 52171502 ECH
Viun3g04436 3 52170338 52171502 Viun9g01191 9 10887329 10888691 PCT