Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04434 ATGGCTATCAGAGGCGTGGATTTCAAGTGGTACGATGGCTTTTTTCTGTCTATGCTCGCCACCAGTGTAGTTATTGTCGCAATTAATTGGAAGCGGTATCATTCTTGTACCTATCCGTTGCACATATGGATTGTGGTCGACTACACTACTGTGTTTGTTTTCCGGCTCTTGATGTTTGTTGATAACGGGCTTGCTGCGGGAATGGGTTTAGATTTTGGGTGGCAGCAGAGATACGCTCGTTTCTGTGGAAGAGTAGTTGTCCTTTCAATCCTTGTGTTGCTTCTCTATCCATTTCTGTGGGGTTGGACTGTAATGGGTACCCTGTGGTTCAGCAGTGCAAAGAACTGTTTGCCTGAAGATGGTCAAAAATGGGGCTTTCTCATCTGGTTACTTTTTAGTTACTGTGGACTCCTTTGCATCGCTTGCATGTCTCTGGGAAAGTGGTTGACACGAAGACAAGCACATCTACTTCGTGCTCAACAGGGTATCCCTGTATCTGAATATGGGGTTCTGGTTGACATGATCCGAGTGCCTGATTGGGCATTTGAAGCTGCTGGTCAAGAAACAAGGGGCATGGTACAAGATGCTGCGGCATATCATCCAGGACTTTACCTAACTCCAGCTCAGAGAGAAGCAGTTGAAGCTTTAATTCAGGAACTCCCAAAGTTCAGGTTAAAGGCTGTTCCTACCGATTGCAGTGAATGTCCCATCTGCTTAGAAGAGTTCTATGTAGGGAATGAGGTTCGAGGCTTGCCTTGTGCTCACAATTTTCATGTTGAATGCATTGATGAGTGGCTTAGGCTGAATGTGAAATGTCCTCGGTGTCGTTGTTCAGTATTTCCAAACCTTGATCTTAGTGCACTATCCAATCTCCGTTCAGAGCCTGACCGATCTTCTGCAAGTGTTGTAACAACAACCAGTTATGTGAGAGGCCAACCATCTAGTCAAAGTTACAGGTTAAGATTGCAGGGTCTTCTGCGTCCGGTCCGTGCTGAAATTGCTGGCCCTGTTGGTGACATAGATAATTCCCTGGACAATGCTGAGAACGGTTTTGTATCAATTGTGACTCACAATGCATCATCTGGAGACCACGTCTCTTCTGTCGAATGCGTGCCTGTCACTGTAAGACTTTCCTCTGCACAAAGTTAG 1149 0.4587 MAIRGVDFKWYDGFFLSMLATSVVIVAINWKRYHSCTYPLHIWIVVDYTTVFVFRLLMFVDNGLAAGMGLDFGWQQRYARFCGRVVVLSILVLLLYPFLWGWTVMGTLWFSSAKNCLPEDGQKWGFLIWLLFSYCGLLCIACMSLGKWLTRRQAHLLRAQQGIPVSEYGVLVDMIRVPDWAFEAAGQETRGMVQDAAAYHPGLYLTPAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFYVGNEVRGLPCAHNFHVECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRSEPDRSSASVVTTTSYVRGQPSSQSYRLRLQGLLRPVRAEIAGPVGDIDNSLDNAENGFVSIVTHNASSGDHVSSVECVPVTVRLSSAQS 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04434 382 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 359 IPR044793 GO:0004842|GO:0010182
Viun3g04434 382 SMART ring_2 235 275 IPR001841 -
Viun3g04434 382 SUPERFAMILY RING/U-box 217 284 - -
Viun3g04434 382 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 281 IPR013083 -
Viun3g04434 382 ProSiteProfiles Zinc finger RING-type profile. 235 276 IPR001841 -
Viun3g04434 382 Pfam Ring finger domain 234 276 IPR001841 -
Viun3g04434 382 FunFam E3 ubiquitin-protein ligase SIS3 203 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04434 Viun-Chr3 52113234 52120203 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04434 58 360 C3H Transcription Factor Family AT3G47990 73.203 5.25e-159 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04434 K16284 - gmx:100812016 742.651
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04434 3 52113234 52120203 Viun3g04434 3 52113234 52120203 ECH
Viun3g04434 3 52113234 52120203 Viun9g01195 9 11039448 11043214 PCT