Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04430 ATGGAAGCTTATGAGAACGAATCCAAGAAGGGGTTCTGGAATGCGGAGGAAGACTCAGTTCTGACTAATTACGTGAAAAAGCATGGAACTGGGAAGTGGAACCGGATTCCTAAAGTGACAGGGTTGAAGAGAAGCGGCAAAAGTTGCAGGCTGAGATGGATGAATTATCTAACTCCTGATGTCAAGCGTGGAGATTTCTCAGAAGAAGAAGAAGACCTTGTTGTTCGGCTTCACAGTCTCCTTGGAAATAGGTGGTCTTTGATCGCGGGGAGGATTCCTGGGAGAACAGACAACCAGGTGAAGAACTTTTGGAACACTCATTTAAGCAAGAAGCTTGGTGTTGACAAGAAGAAAAAGAGAAAAGCTTGTGTCACTGCAAAATATATCCCCAGAGTTGAAGCTGGTGAGCGTGATTGTAAAAGTGCATCATCATCAAAGGGGAAGCTTGTTCATGAAAGTTGGAGTGATGATTTAATGGAGTTGGGAAGCATGCATGAGGGGATTATGAGAGATGATTTTGGATGTACCTTTTCTTTTCCTAATACTGTCTTTGATCTATGCACTTCTCCTTACTGCACTCAATCTTTTCACCACTCTTTCTTTGCCCTTTGA 612 0.4297 MEAYENESKKGFWNAEEDSVLTNYVKKHGTGKWNRIPKVTGLKRSGKSCRLRWMNYLTPDVKRGDFSEEEEDLVVRLHSLLGNRWSLIAGRIPGRTDNQVKNFWNTHLSKKLGVDKKKKRKACVTAKYIPRVEAGERDCKSASSSKGKLVHESWSDDLMELGSMHEGIMRDDFGCTFSFPNTVFDLCTSPYCTQSFHHSFFAL 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04430 203 CDD SANT 66 108 IPR001005 -
Viun3g04430 203 CDD SANT 13 57 IPR001005 -
Viun3g04430 203 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 57 IPR017930 -
Viun3g04430 203 ProSiteProfiles Myb-like domain profile. 58 108 IPR001005 -
Viun3g04430 203 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 112 IPR017930 -
Viun3g04430 203 SMART sant 62 110 IPR001005 -
Viun3g04430 203 SMART sant 9 59 IPR001005 -
Viun3g04430 203 FunFam Transcription factor WER 64 134 - -
Viun3g04430 203 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Viun3g04430 203 Gene3D - 10 62 - -
Viun3g04430 203 Pfam Myb-like DNA-binding domain 63 108 IPR001005 -
Viun3g04430 203 Pfam Myb-like DNA-binding domain 11 57 IPR001005 -
Viun3g04430 203 Gene3D - 64 129 - -
Viun3g04430 203 SUPERFAMILY Homeodomain-like 8 104 IPR009057 -
Viun3g04430 203 FunFam MYB-related transcription factor 9 62 - -
Viun3g04430 203 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 6 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04430 Viun-Chr3 52064841 52065804 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04430 5 114 MYB Transcription Factor Family AT5G40330 72.727 6.68e-59 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun3g04430 Myb_DNA-binding 1.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04430 K09422 - zju:107418407 203.756