Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04404 ATGGTGCAATTTTTTAACGTTCCTGAAAATCTTATTACCTGGCTATGCCTAATGCTGCTGTCGTCGTCGTTGTTAATCCCACGTGCGGGATGCTCCGGCACGGGTATACGCGAAACGGGTCTCACGTGCGGGGATTATGAGAACCCTGAGTCTACCGCGTCGAATTTCATGGCCATAATGGACATGGTGTCGTTTCAGGTCAAAGAGCGAGGGTGGGGAGCGCAGACGCTGCTGGGTTCTGGGCCTCCGATGTACGCATTGGCCCAATGCCGGCGCGACCTGAAGCCCGCGGACTGCTACATGTGTTTCAGCCAAGCGAAGCTGGTGTTGTCACGGTGCGTGCCCAAGGCAGCTGGCAGAATCTACCTCGACGGCTGCTTCCTCCGATACGACGATTACTCCTTTATCCGCGAGAGCGTGGACCCCACTCATGATATCGGCATCTGCGTGGCCCCAACTCTGGGGAATGACACGGCCAGCTTGGTGTCGGCGATGGTGTCGAACGTGACGGAGGAGGCAACGGAGCGTGGGTTCGCGGTGGACGGAGGGGAGGGGATTTTCGCCCTGGCGCAGTGCTGGTCGACGCTGAACAAAGGGAGGTGCAAGATATGCTTGACCGAAGCGGCGAAGAAAGTGCTGGAATGTGTGCCCAGTGGTGAGGGTAAGAGTCTATTCACTGGTTGCATTTTGAGGTATTCAAGGCACAAATTCTACAACGACGTTTCAACATCTAACGACATCAAGGTTTCTCCTTCTACAGTTCAAGTTAATTCAGAAGGGCCTGGTGTGTGGACGATCGTTGCATTTGTATTATCATTGATGGTAGGGATTTCATTCATCGTAATAGCTGCATCTATGTGCTGCCATAGAATGTCGTCACGTAGAAAAGTAAGCGACAGTGGTGGTTTGGCACCTGATTTTTCCTTCGTAGCTGGCTTCAGTTTTAGGTACGATTTGCTCGAGAACGCCACAGATCATTTTGATCCTGCAAACAAATTAGGTCAAGATGGAGCTGCTTCCGTGTTCAAAGGAACCCTCCCCACTGGGAAGATTGTTGCTGTTAAACGATTATTTTTTAATAAACGGCAATGGACAGAGGGGTTCTTCAATGAGATCAATTTGATTAGTGGGATTCAACACAAGAATGTGGTGAAGCTTTTGGGGTGCAGCATTGAAGGCCCTGAAAGCCTGTTGGTTTATGAATTTGTGCCCAATGGAAGTCTTGATCAATTCCTTTTCGGTAGGGGCTCAGAAGATGCTCTGAACTGGGAAAAACGGTTTCAAATCATATGTGGGGTAGCTGAGGGCCTAGCATACCTTCATGAAGGCTCTGGAACAAAGATTATTCACAGAGACATAAACTCTAGCAACATTCTATTTGATGAGAATATGAATCCAAAAATAGCGGATTTTGGTCTTGCTCGCATTGTTACTGGAAACAAATCTCATCTTAAGACAGCAAATTCGAGAACACTGGGATATTCGGCTCCTGAATATGTTTCCAAAGGACAACTGACAGAGAAGGCAGACATATATGCTTTTGGTGTCCTAATTGTTGAAATTGTGTGTGGTAAGAGGAACAGTGATCACATAGAGGGGTCAACTTCACTTCTCCACAGCGTGTGGAAGAATTACAAGGCAAATAATATAACAGCATCCGTTGATCCAGCTCTGAAAGGTAAACTTACGGTAGAAGAAGCATCACATACGCTCCAAGCTGGCCTTCTTTGTACACAATCAAATGTTACTCTGAGACCATCCATGTCTGAAGTAGTTCAGATGCTAACCAAGAAAGACTACGCTATTCCCTCTCCAAAGCAACAACCATTCCTCAATTTCGGTGGGCTAAGTCAAAGTGACCGCACTGTATCCTCAAATGGGCTTGCAAGTGCAAGGTCCTCCTTCCACAGCACCACCAGTTCACTAATTCCAAATGAGATTTAA 1944 0.4763 MVQFFNVPENLITWLCLMLLSSSLLIPRAGCSGTGIRETGLTCGDYENPESTASNFMAIMDMVSFQVKERGWGAQTLLGSGPPMYALAQCRRDLKPADCYMCFSQAKLVLSRCVPKAAGRIYLDGCFLRYDDYSFIRESVDPTHDIGICVAPTLGNDTASLVSAMVSNVTEEATERGFAVDGGEGIFALAQCWSTLNKGRCKICLTEAAKKVLECVPSGEGKSLFTGCILRYSRHKFYNDVSTSNDIKVSPSTVQVNSEGPGVWTIVAFVLSLMVGISFIVIAASMCCHRMSSRRKVSDSGGLAPDFSFVAGFSFRYDLLENATDHFDPANKLGQDGAASVFKGTLPTGKIVAVKRLFFNKRQWTEGFFNEINLISGIQHKNVVKLLGCSIEGPESLLVYEFVPNGSLDQFLFGRGSEDALNWEKRFQIICGVAEGLAYLHEGSGTKIIHRDINSSNILFDENMNPKIADFGLARIVTGNKSHLKTANSRTLGYSAPEYVSKGQLTEKADIYAFGVLIVEIVCGKRNSDHIEGSTSLLHSVWKNYKANNITASVDPALKGKLTVEEASHTLQAGLLCTQSNVTLRPSMSEVVQMLTKKDYAIPSPKQQPFLNFGGLSQSDRTVSSNGLASARSSFHSTTSSLIPNEI 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04404 647 Pfam Protein kinase domain 330 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g04404 647 Pfam Salt stress response/antifungal 160 234 IPR002902 -
Viun3g04404 647 Pfam Salt stress response/antifungal 72 133 IPR002902 -
Viun3g04404 647 Gene3D Phosphorylase Kinase; domain 1 303 402 - -
Viun3g04404 647 CDD STKc_IRAK 333 597 - -
Viun3g04404 647 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 84 621 - -
Viun3g04404 647 SUPERFAMILY Protein kinase-like (PK-like) 310 598 IPR011009 -
Viun3g04404 647 Gene3D - 152 237 IPR038408 -
Viun3g04404 647 Gene3D - 37 135 IPR038408 -
Viun3g04404 647 ProSiteProfiles Gnk2-homologous domain profile. 34 135 IPR002902 -
Viun3g04404 647 ProSiteProfiles Protein kinase domain profile. 327 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g04404 647 Gene3D Transferase(Phosphotransferase) domain 1 403 606 - -
Viun3g04404 647 ProSiteProfiles Gnk2-homologous domain profile. 136 237 IPR002902 -
Viun3g04404 647 FunFam Putative DUF26-domain receptor-like protein kinase family protein 306 402 - -
Viun3g04404 647 FunFam Cysteine-rich receptor-like protein kinase 2 403 603 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04404 Viun-Chr3 51864728 51869672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04404 17 612 Receptor kinase-like Gene Family AT1G70520 41.167 2.67e-148 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun3g04404 Pkinase 1.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04404 - - var:108339307 927.546