Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04391 ATGCCTGTAAATCCATGGACCCTCTTCTTCTTATGCATTTCCCTTCTGCTCCCACTCCATTTTCTCACAGCTGCTGCAGTGAATCAACAAGGGGAGGCTCTTCTATCATGGAGGAGAACCCTAAACGGGTCCCTGGAGGTATTGAGTAACTGGGACCCAGTTCAAGACACCCCATGTAGCTGGTATGGAGTGAGTTGCAACACCAAGAACGAAGTAGTACAGCTGGATCTGAGGTATGTGGATTTGCTTGGAACACTGCCCACTGATTTCACCTCATTGCTTTCCTTAAGCAGTCTGATCTTAGCCGGAGCCAATCTCACGGGTTCAATTCCAAAAGAAATAGGTTACCTTGTGGAACTCAGCTACTTGGACTTAAGTGACAATGCCTTGAGTGGCGAAATACCAAGTGAGCTATGTTACTTGCCTAAACTTGAGGAACTCCATCTCAACTCCAATGACCTCGTGGGCTCCATTCCAGTTGCAATTGGGAACCTCACGAACTTGCAGAAGCTGATCCTATATGACAACCAACTCAGCGGGGAAATTCCTACCACCATCGGCAACCTTAAGAGCCTTCAAGTCATAAGAGCAGGAGGAAACAAGAACCTGGAGGGTCCTCTACCACGAGAAATCGGCAACTGTTCCAGTTTAGTGATGTTGGGTCTTGCTGAAACTAGCCTCTCAGGTTCTCTGCCACCAACTCTTGGCCTTCTCAAGAACCTTGAAACCATTGCCATTTACACTTCCTTACTCTCCGGTGAAATACCACCTGAACTTGGGGACTGCACAGGGCTTCAAAACATTTACCTTTACGAGAACTCTCTCACTGGATCCATACCAAGCAAGTTGGGAAACCTTAAGAACCTCGAAAACCTTCTACTGTGGCAGAACAACCTAGTTGGTACCTTGCCCCCCGAGATTGGCAACTGTGAGGAGTTGTCAGTGATTGACGTGTCAATGAACTCACTAACCGGAAGCATTCCCAACACTTTCGGGAACTTGACATCATTGCAAGAGCTCCAACTCAGTGTGAACCAGATTTCGGGGGAGATACCAGGAGAACTGGGTAAGTGTCAGCAACTCACACATGTGGAGCTTGACAACAATCTCATCACTGGTACCATACCTTCCGAATTAGGAAACCTAGCGAATCTAACGCTCTTGTTCTTATGGCACAACAAGCTGCAAGGTAACATTCCCTCTTCCCTTTCCAATTGTCAAAACCTAGAGGCTATTGATCTGTCACAGAATGGATTAACGGGTCCCATACCCAAAGGGATATTCCAGCTCAAGAATCTCAACAAGCTTTTGCTCCTGTCCAATAACCTCTCAGGGAGAATCCCCTCTGAGATTGGGAATTGTTCTTCCCTTATTCGATTCCGAGCCAACGACAACAACATCACCGGGAACATTCCCTCGCAGATTGGGAATCTCAATAATTTGAATTTCCTTGACCTAGGGAATAATCGGATTTCCGGCGGTATCCCGGAGGAGATATCCGGCTGCCGGAATCTCGCATTTCTAGATATACATTCGAACTTTCTCACCGGCAACCTACCGGAAAGTTTGAGCCGGCTTAATTCGCTTCAGTTTCTCGATGTTTCCGACAACATGATCGAAGGTGTACTAAACCCCACCGTCGGCGAACTCACCGCGCTCTCCAAGCTAGTTCTCTCGAAGAATCGAATCTCTGGCTCAATTCCGAGTCAAATTGGGTCTTGTTCTAAATTACAATTACTGGATCTCAGTAGCAACAATCTCTCCGGCGATATCCCCGGCAGCATCGGCAACATTCCGGCATTGGAAATCGCTCTGAATCTGAGCCTGAACCAACTATCCGGCGAGATCCCTCGGGAGTTCTCCGGGTTGACGAAGCTCGGGGTGCTGGACATATCTCACAACACTCTCAGCGGAAACATTCAATATCTCGCGGGTCTGCAGAATCTGGTGGTGCTCAATATCTCGAATAACAAATTCTCGGGACGAGTTCCGGACACGCCTTTCTTCGCGAAGCTGCCGCTGAGTGTGCTGGCGGGGAACCCGGCGCTGTGCTTTTCCGGCAACGAGTGCAGTGGCGATGGTGGTGGAAGGTCGGGTCGACGGGCGAGGGTAGCGCGCGTGGCTATGGTGGTCCTGCTGTGCACCGCGTGCTTGCTACTCATGGCGGCGCTGTACGTCGTCGTCGCAGCGAAACGGCGAGGGGACCGCGAAAACGACGTGGAACTAGATGGAAAGGACAGCGACGTGGACATGGCCCCACCTTGGGAAGTGACACTGTACCAGAAACTCGATTTGTCCATCTCTGACGTAGCGAGATGTCTCACTGCTGGCAACGTCATCGGCCAAGGCCGATCCGGCGTCGTTTATAGGGTGGACCTGTCGAGCACGGGACTCGCCATCGCGGTGAAGAAGTTCCGGTTGTCGGAGAAATTCTCCGCGGCAGCGTTCTCGTCGGAGATTGCGACGCTTGCGCGAATCCGTCACCGGAACATCGTGCGGCTGCTGGGTTGGGGGGCCAACAGGAGAACAAAGTTACTGTTTTACGATTATTTACCGAACGGTAACCTGGACACGCTGTTACACGAGGGGTGCACAGGATTAATTGATTGGGAGACGAGGCTCAAGATAGCCTTGGGCGTGGCTGAGGGCGTGGCTTACCTGCACCATGATTGCGTGCCAGCTATCTTGCACCGGGACGTCAAGGCGCAGAACATTTTATTAGGAGACAGATATGAGCCCTGTTTGGCGGATTTTGGTTTCGCTCGATTCGTGGAAGAGGATCACGCCTCCTTTTCGATTAATCCACATTTCGCCGGCTCCTACGGTTACATTGCTCCCGAGTATGCTTGCATGCTGAAAATCACAGAGAAGAGCGACGTGTACAGCTTTGGAGTGGTCCTACTGGAGATAATAACGGGGAAAAGGCCAGTGGATCCATCATTCCCGGATGGGCAACATGTTATTCAGTGGGTCAGGGAGCAGCTGAAGAGCAAGAAGGACCCGATCCAGGTTCTAGATTCCAAGCTCCAAGGCCATCCAGACACACAAATCCAAGAGATGCTACAAGCACTTGGTATTGCCCTCTTGTGCACAAGTAATCGTGCAGAGGATCGACCCACGATGAAAGATGTTGCGGCATTATTGAGAGAAATTCGTCACGATTCTCCACCAGCCGCTGAGCCCCACAAGCCCAAACCCAAAACATCTCAACCTTCCTCCTATTCCTCCTCCTCTGTCACCCCTGCTCAGTTGTTGCTCCTACAATCTTCCTCCAACTCCTCATCCCTTGCTTATTCCTCTTCCTCCGCAGCACCCTACCTCCCTCCAAGGAATCAATCCTCCATTCAAATTTAA 3354 0.5063 MPVNPWTLFFLCISLLLPLHFLTAAAVNQQGEALLSWRRTLNGSLEVLSNWDPVQDTPCSWYGVSCNTKNEVVQLDLRYVDLLGTLPTDFTSLLSLSSLILAGANLTGSIPKEIGYLVELSYLDLSDNALSGEIPSELCYLPKLEELHLNSNDLVGSIPVAIGNLTNLQKLILYDNQLSGEIPTTIGNLKSLQVIRAGGNKNLEGPLPREIGNCSSLVMLGLAETSLSGSLPPTLGLLKNLETIAIYTSLLSGEIPPELGDCTGLQNIYLYENSLTGSIPSKLGNLKNLENLLLWQNNLVGTLPPEIGNCEELSVIDVSMNSLTGSIPNTFGNLTSLQELQLSVNQISGEIPGELGKCQQLTHVELDNNLITGTIPSELGNLANLTLLFLWHNKLQGNIPSSLSNCQNLEAIDLSQNGLTGPIPKGIFQLKNLNKLLLLSNNLSGRIPSEIGNCSSLIRFRANDNNITGNIPSQIGNLNNLNFLDLGNNRISGGIPEEISGCRNLAFLDIHSNFLTGNLPESLSRLNSLQFLDVSDNMIEGVLNPTVGELTALSKLVLSKNRISGSIPSQIGSCSKLQLLDLSSNNLSGDIPGSIGNIPALEIALNLSLNQLSGEIPREFSGLTKLGVLDISHNTLSGNIQYLAGLQNLVVLNISNNKFSGRVPDTPFFAKLPLSVLAGNPALCFSGNECSGDGGGRSGRRARVARVAMVVLLCTACLLLMAALYVVVAAKRRGDRENDVELDGKDSDVDMAPPWEVTLYQKLDLSISDVARCLTAGNVIGQGRSGVVYRVDLSSTGLAIAVKKFRLSEKFSAAAFSSEIATLARIRHRNIVRLLGWGANRRTKLLFYDYLPNGNLDTLLHEGCTGLIDWETRLKIALGVAEGVAYLHHDCVPAILHRDVKAQNILLGDRYEPCLADFGFARFVEEDHASFSINPHFAGSYGYIAPEYACMLKITEKSDVYSFGVVLLEIITGKRPVDPSFPDGQHVIQWVREQLKSKKDPIQVLDSKLQGHPDTQIQEMLQALGIALLCTSNRAEDRPTMKDVAALLREIRHDSPPAAEPHKPKPKTSQPSSYSSSSVTPAQLLLLQSSSNSSSLAYSSSSAAPYLPPRNQSSIQI 1117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04391 1117 Gene3D Ribonuclease Inhibitor 519 603 IPR032675 -
Viun3g04391 1117 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 425 519 - -
Viun3g04391 1117 SMART serkin_6 774 1048 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g04391 1117 SMART LRR_typ_2 117 141 IPR003591 -
Viun3g04391 1117 SMART LRR_typ_2 165 189 IPR003591 -
Viun3g04391 1117 SMART LRR_typ_2 550 574 IPR003591 -
Viun3g04391 1117 SMART LRR_typ_2 478 502 IPR003591 -
Viun3g04391 1117 SMART LRR_typ_2 430 454 IPR003591 -
Viun3g04391 1117 SMART LRR_typ_2 334 358 IPR003591 -
Viun3g04391 1117 SMART LRR_typ_2 382 406 IPR003591 -
Viun3g04391 1117 SMART LRR_typ_2 286 310 IPR003591 -
Viun3g04391 1117 SMART LRR_typ_2 646 679 IPR003591 -
Viun3g04391 1117 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 851 1065 - -
Viun3g04391 1117 Gene3D Ribonuclease Inhibitor 29 139 IPR032675 -
Viun3g04391 1117 SMART LRR_sd22_2 526 544 - -
Viun3g04391 1117 SMART LRR_sd22_2 117 149 - -
Viun3g04391 1117 SMART LRR_sd22_2 165 191 - -
Viun3g04391 1117 SMART LRR_sd22_2 623 645 - -
Viun3g04391 1117 SMART LRR_sd22_2 574 600 - -
Viun3g04391 1117 SMART LRR_sd22_2 262 288 - -
Viun3g04391 1117 SMART LRR_sd22_2 478 501 - -
Viun3g04391 1117 SMART LRR_sd22_2 382 411 - -
Viun3g04391 1117 Gene3D Ribonuclease Inhibitor 140 218 IPR032675 -
Viun3g04391 1117 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 27 200 - -
Viun3g04391 1117 MobiDBLite consensus disorder prediction 1094 1117 - -
Viun3g04391 1117 FunFam LRR receptor-like serine/threonine-protein kinase 763 850 - -
Viun3g04391 1117 ProSitePatterns Serine/Threonine protein kinases active-site signature. 895 907 IPR008271 GO:0004672|GO:0006468
Viun3g04391 1117 ProSiteProfiles Protein kinase domain profile. 774 1056 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g04391 1117 Gene3D Phosphorylase Kinase; domain 1 758 850 - -
Viun3g04391 1117 SUPERFAMILY RNI-like 316 664 - -
Viun3g04391 1117 FunFam Putative LRR receptor-like serine/threonine-protein kinase At4g26540 family 520 603 - -
Viun3g04391 1117 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 201 424 - -
Viun3g04391 1117 MobiDBLite consensus disorder prediction 1066 1080 - -
Viun3g04391 1117 Pfam Leucine rich repeat 312 371 IPR001611 GO:0005515
Viun3g04391 1117 Pfam Leucine rich repeat 552 612 IPR001611 GO:0005515
Viun3g04391 1117 MobiDBLite consensus disorder prediction 1054 1080 - -
Viun3g04391 1117 Gene3D Transferase(Phosphotransferase) domain 1 851 1066 - -
Viun3g04391 1117 ProSitePatterns Protein kinases ATP-binding region signature. 780 804 IPR017441 GO:0005524
Viun3g04391 1117 FunFam Putative LRR receptor-like serine/threonine-protein kinase 604 689 - -
Viun3g04391 1117 Gene3D Ribonuclease Inhibitor 327 422 IPR032675 -
Viun3g04391 1117 Gene3D Ribonuclease Inhibitor 423 518 IPR032675 -
Viun3g04391 1117 Pfam Leucine rich repeat N-terminal domain 28 67 IPR013210 -
Viun3g04391 1117 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 342 1043 - -
Viun3g04391 1117 Gene3D Ribonuclease Inhibitor 219 326 IPR032675 -
Viun3g04391 1117 Gene3D Ribonuclease Inhibitor 604 691 IPR032675 -
Viun3g04391 1117 SUPERFAMILY Protein kinase-like (PK-like) 771 1083 IPR011009 -
Viun3g04391 1117 Pfam Protein kinase domain 777 1044 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g04391 1117 SUPERFAMILY RNI-like 75 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04391 Viun-Chr3 51745070 51749639 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04391 26 1103 Receptor kinase-like Gene Family AT5G56040 54.278 0.0 1121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Viun3g04391 Pkinase 9.8e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04391 - - gmx:100778064 1822.75