Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04386 ATGGCATCATCCAGCTCCTACAATTCTCCATGTGCTGCCTGCAAATTCTTGAGGAGGAAATGCATGCCGGGATGCATCTTTGCGCCTTACTTCCCACCGGAAGAGCCTCAAAAATTCGCCAACGTGCACAAAATATTTGGTGCTAGCAATGTGACGAAACTCCTGAACGAACTCCTCCCTCAGCAGAGGGAGGATGCAGTGAACTCACTCGCATACGAAGCAGAGGCACGCGTGAGGGACCCAGTTTATGGCTGCGTAGGAGCCATCTCTTTCCTGCAGAGACAAGTTCAAAGGCTCCAAAAGGAGCTTGATGCTGCAAACGCTGATCTGCTACGCTACTCTTACACTGACATCCCTCCAGCATCTCTTTCTGTGCCACCAGGACTTGCTTCATTTCAACATGTGCCCCAAAGGCAGTTTACTGCAAGATTTGGTAACGAAGCAACTGGGTTCTATCGCCAATCTACTGCAACTGCTTATTCCTTTCCTTATGCCCTTCCTTGGACTGATACCTCTTCGGAGGACATCAGTGAGGGAGGAGCTGCAGGAGGTAATTTGTGA 561 0.4991 MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPQQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLLRYSYTDIPPASLSVPPGLASFQHVPQRQFTARFGNEATGFYRQSTATAYSFPYALPWTDTSSEDISEGGAAGGNL 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04386 186 Coils Coil 89 109 - -
Viun3g04386 186 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Viun3g04386 186 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 134 - -
Viun3g04386 186 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04386 Viun-Chr3 51664065 51666457 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04386 2 186 AS2 family AT5G63090 61.257 3.76e-75 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Viun3g04386 LOB 3.1e-42 No_clan