Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04381 ATGATGGGCAATCCTAACCCTAACCCTAGCCCTAATCCTGCTCCGGAAAAGGAAAAGAGGCTCCAAGAAGAGCTGTTGGGTCCCATCTTACTGGGAGACCGCATCATAAAACTGGCTCAGGAGGCGGAGTCGTCCAAGGTGGACTGCACGGAGCTGGCGCGGAAGGTGCAGGTGGTGTGCGACAACCTGCGTTCCGTCGTGCGTGTGGTGTCGGGGACGCAGTGCGTGAACGAGCGCCCCATACGCCGCATCGTCGGCGAGGTCTCCAAAAACCTAGAGCGCACGTTAGCGTTCGTGCGCAAGTGCAAGAAACACGGTGGCGTCCTCCGCCAGGTCTTCTCCATGACCACGACTGCCGACTTCCGCAAGGTCTGGAACCTTCTGGAATCTTCGAACGGCGACTTGGTATGGCTCCTCACCATCTTGGACTCGAAGGAGGGTACCAATGTCTCCCTTCCCCCCATCGCCAGCAACGACCCCATCCTTGCATGGGTCTGGACCTTCACCTACACTCTTCAATTGGGTCAGCCAAAGGACCGCGCGGAAGCCGCCACAGAACTTGGCTCCCTCGCCAGAGGAAACGAGCGTACAAAATTCATCATCTTGGAGGAAGGTGGAGTGCCTCCTCTCCTCAAGCTTCTCAAGGAAGCTTCTTCCCCTGATGCTCAGGTTGCTGCTGCCAATGCTCTTGTCAACGTTACTACTAATCAAGAGAGTGTCGTTAGCTACGTCGTAGAGTCCCATGCTGCCCCCACTATTGTTCAGGTCCTTGGTGACTCCCCTATGAGGGTTCGTGTCTCTGTTGCCAATTTAGTCTCAGCTATGGCTGAGCAAAATGAACTTGCTCGCGAGGAGTTCGTGAGGGCCAATGTGACTAGGCCCCTCGTGTCGTTGTTGTCCATGGATACTGTCCTTGCTGACCCCATGGCCGGTCGTGCTAGCATCCATTCGCTTGTTCTGAATTTGTCCAACGTTGGGGAGACAAATTCGGATGGGAGTAGCCGTGGCTCCAGCCACCATCGGAGGGAAAGGGAAAGAGAGGTTGAGAGCCCGGAGTTGAGGAATGAGGTCAAAATCAGTTGTGCTAAGGCTCTCTGGAAACTCTCCAAAGGGTGTCTTTCAAGTTGCAAGAAGATTACCGAGACTAAAGGTTTGCTTTGTCTGGCTAAGATGATTGAGTCTGAGAGTGGGGAATTGCAACTTAATTGTCTTATGGCTGTCATGGAGATTGCTGCTGTGGCAGAGTCCAATGCTGATCTTAGAAGAGGTGCTTTTAAGCGAACTGCGCCAGCGGCAAAGGCGGTACTGGATCAGCTGTTGAGGGTGGTACAGGAAGAGGGTAATCCGGCACTGGTGATTCCTGCCATTAAGGCAATTGGTTCCTTGGCCAGAAACTTCTCTGGAAAGGTTCCGCAAGTTCTTGGTCCTTTAGTTGCTCAGCTTGGTAGCAGAGATGTTGACGTAGCCAGTGAGGCTGCCATTGCATTGGGAAAGTTTGTCAGCCCGGACAACTACAATTGCGTTGACCATTCTAAAGCAATACTTGAGCTTGATGGGGTTCCGAAGCTAATGAGCCTGCTGCAGATAAATGATCGCCAACAAGTTCATGGCCTGAAATTACTTTGTTACCTTGCCTTAAATGTAGGTAACAGTAAGGTCCTTGAGCAAGAACGTGCCTTGAATACCTTAGAGAGGTTTGCTCGTCCTGTTCAAACACAATATCCTGATTTGAAGGACCTGTTTGCAAAGGCTATACACCACCTCACTCTTTATCAGCCAGGAGCTCAATTGCACAGACAGCCCTTGGGGCTGTAA 1815 0.5218 MMGNPNPNPSPNPAPEKEKRLQEELLGPILLGDRIIKLAQEAESSKVDCTELARKVQVVCDNLRSVVRVVSGTQCVNERPIRRIVGEVSKNLERTLAFVRKCKKHGGVLRQVFSMTTTADFRKVWNLLESSNGDLVWLLTILDSKEGTNVSLPPIASNDPILAWVWTFTYTLQLGQPKDRAEAATELGSLARGNERTKFIILEEGGVPPLLKLLKEASSPDAQVAAANALVNVTTNQESVVSYVVESHAAPTIVQVLGDSPMRVRVSVANLVSAMAEQNELAREEFVRANVTRPLVSLLSMDTVLADPMAGRASIHSLVLNLSNVGETNSDGSSRGSSHHRREREREVESPELRNEVKISCAKALWKLSKGCLSSCKKITETKGLLCLAKMIESESGELQLNCLMAVMEIAAVAESNADLRRGAFKRTAPAAKAVLDQLLRVVQEEGNPALVIPAIKAIGSLARNFSGKVPQVLGPLVAQLGSRDVDVASEAAIALGKFVSPDNYNCVDHSKAILELDGVPKLMSLLQINDRQQVHGLKLLCYLALNVGNSKVLEQERALNTLERFARPVQTQYPDLKDLFAKAIHHLTLYQPGAQLHRQPLGL 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04381 604 SMART arm_5 236 277 IPR000225 GO:0005515
Viun3g04381 604 SMART arm_5 279 370 IPR000225 GO:0005515
Viun3g04381 604 SMART arm_5 194 235 IPR000225 GO:0005515
Viun3g04381 604 SMART arm_5 507 546 IPR000225 GO:0005515
Viun3g04381 604 SUPERFAMILY ARM repeat 176 588 IPR016024 -
Viun3g04381 604 MobiDBLite consensus disorder prediction 334 352 - -
Viun3g04381 604 Gene3D - 168 332 IPR011989 -
Viun3g04381 604 FunFam Armadillo repeat only 2 334 588 - -
Viun3g04381 604 PANTHER ARMADILLO REPEAT ONLY 4 21 592 - -
Viun3g04381 604 Gene3D - 343 599 IPR011989 -
Viun3g04381 604 Gene3D - 25 141 IPR036537 GO:0007166
Viun3g04381 604 MobiDBLite consensus disorder prediction 326 352 - -
Viun3g04381 604 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 205 239 IPR000225 GO:0005515
Viun3g04381 604 Pfam Armadillo/beta-catenin-like repeat 199 234 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04381 Viun-Chr3 51572154 51575668 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04381 176 300 U-box Gene Family AT2G28830 32.000 3.17e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04381 - - gmx:100813824 1026.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04381 3 51572154 51575668 Viun3g04381 3 51572154 51575668 ECH
Viun3g04381 3 51572154 51575668 Viun9g01337 9 13252647 13261635 PCT