Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04377 ATGAACCCCTACGACAATAGATACTCTGATCCCGCTTCTTTTCACGCTCGTCGCAGCGATATCGTTAGATCTATTCCTCCGCCGTCTTTAGGCGGTCGCGGCGACGCGGTTCCCTATGGCGCCTTTAGGTCCAACGGGTTCGGATCCGCACCTGTTGCTCCGATTCCACCATTTGTACCCCCTCCTGGGGGTTTTAGCGTAGGACGAGGTAGTGGTAGAGTGGGCAATGGTCACCTGAGTGATAGAAAACACGACATAGGTCGTAGTGGCGGTGGAAGAGGTCGTGGCGGCGGTAGAGGCGGGGTTCACAGTTTTAGGGGCTCCAGGAGAGGAGGTAGACACGATGGTGGATCTTCTAGGGACGATTTGAACAATATTACACTTCCGAAGCAGAGTTTTAAGAATTTGGTCCCTTTTGAGAAGAATTTTTACGTTGAGTGCCCTGCGGTGAGAGCCATGTCTGAGCAAGAAATTATGCATTACCGTGCTTCTAGAGAGATCACCGTGCAAGGCCATGATGTGCCGAAACCTGTACGGATGTTTCACGAGGCGAATTTTCCTGATTATTGCCTTGAGGTCATTGCCAATCTGGGTTTTGCAGAGCCCACTCCAATTCAGGCTCAGGGTTGGCCCATGGCAATGAAGGGTAGGGATTTAATTGGCATAGCTGAGACTGGCTCGGGTAAAACTTTGGCGTATTTGCTTCCTGCTTTAGTGCACGTCAACGCTCAACCTCGATTGGCACATGGTGACGGTCCCATTGTCTTAGTATTAGCACCGACAAGAGAGCTAGCTATTCAAATTCAAGAAGAGGCTCTGAAATTTGGGTCTCGAACAAGTATTAGAAGTACGTGCATCTATGGTGGTGCACCAAAGGGCCCCCAAATTCGCGAGCTTAGAAGAGGCGTTGAGATTGTTATTGCTACACCTGGTCGTCTAATAGATATGTTGGAAGCTCAGCACACAAACCTTCAAAGAGTGACTTACCTTGTCTTAGACGAAGCTGATCGAATGCTGGACATGGGTTTTGAACCTCAGATACGGAAAATTGTAGGCCAGATTCGACCTGATAGGCAAACATTATTATGGAGTGCTACATGGCCAAGGGAGGTTGAAACTCTGGCAAGGCAGTTTCTGCGCAATCCGTACAAGGTAATTATCGGGTCACCAAACCTGAAGGCAAATCAATCTATCAATCAAGTTGTTGAAGTTGTAACAGACATGGAGAAATATAATAGATTAATCAGACTGCTGAAAGAAGTGATGGATGGGAGCCGAATTCTAATTTTTATGGAGACAAAAAAGGGATGTGATCAAGTTACGAGACAAATGAGAATTGATGGGTGGCCAGCACTATCCATCCATGGTGATAAAAACCAGGCTGAAAGGGATTGGGTCTTGGCTGAATTTAAGAGTGGCAGAAGTCCAATAATGACTGCCACTGATGTTGCTGCACGGGGTCTTGATGTGAAGGACATTAAATGTGTGATCAATTATGACTTTCCATCAAGCCTGGAAGATTATGTACACAGAATTGGTCGAACTGGTCGTGCAGGAGCCAAAGGAACTGCATACACATTTTTTACACATGCCAATGCCAAGTTTGCCAGGGATCTGATCAAGATTTTACAAGATGCTGGTCAGGATGTGAGTCCTGCATTGTCTGCAATGGTTCGATCAGCTGGTTCTGGTCAATTTGGGGGAAGTTTTCGCACAAGAGGACGTGGAGGCTATGGGAATCGAGGTATGACATCAGGTTCCAATGCCATTCCTCTAGGTTCGAAGAGGCCTTGGCATTATCTATAG 1806 0.4707 MNPYDNRYSDPASFHARRSDIVRSIPPPSLGGRGDAVPYGAFRSNGFGSAPVAPIPPFVPPPGGFSVGRGSGRVGNGHLSDRKHDIGRSGGGRGRGGGRGGVHSFRGSRRGGRHDGGSSRDDLNNITLPKQSFKNLVPFEKNFYVECPAVRAMSEQEIMHYRASREITVQGHDVPKPVRMFHEANFPDYCLEVIANLGFAEPTPIQAQGWPMAMKGRDLIGIAETGSGKTLAYLLPALVHVNAQPRLAHGDGPIVLVLAPTRELAIQIQEEALKFGSRTSIRSTCIYGGAPKGPQIRELRRGVEIVIATPGRLIDMLEAQHTNLQRVTYLVLDEADRMLDMGFEPQIRKIVGQIRPDRQTLLWSATWPREVETLARQFLRNPYKVIIGSPNLKANQSINQVVEVVTDMEKYNRLIRLLKEVMDGSRILIFMETKKGCDQVTRQMRIDGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLDVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAYTFFTHANAKFARDLIKILQDAGQDVSPALSAMVRSAGSGQFGGSFRTRGRGGYGNRGMTSGSNAIPLGSKRPWHYL 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04377 601 SMART helicmild6 438 519 IPR001650 -
Viun3g04377 601 FunFam ATP-dependent RNA helicase RhlB 389 562 - -
Viun3g04377 601 SMART ultradead3 198 401 IPR014001 -
Viun3g04377 601 MobiDBLite consensus disorder prediction 567 590 - -
Viun3g04377 601 CDD DEADc_DDX5_DDX17 191 385 - -
Viun3g04377 601 CDD SF2_C_DEAD 398 528 - -
Viun3g04377 601 Gene3D - 144 385 IPR027417 -
Viun3g04377 601 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 158 558 - -
Viun3g04377 601 MobiDBLite consensus disorder prediction 63 126 - -
Viun3g04377 601 FunFam probable ATP-dependent RNA helicase DDX17 141 388 - -
Viun3g04377 601 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 413 558 IPR001650 -
Viun3g04377 601 Gene3D - 386 561 IPR027417 -
Viun3g04377 601 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 251 539 IPR027417 -
Viun3g04377 601 Pfam Helicase conserved C-terminal domain 409 519 IPR001650 -
Viun3g04377 601 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 179 207 IPR014014 GO:0003724
Viun3g04377 601 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 210 385 IPR014001 -
Viun3g04377 601 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 331 339 IPR000629 -
Viun3g04377 601 Pfam DEAD/DEAH box helicase 203 374 IPR011545 GO:0003676|GO:0005524
Viun3g04377 601 MobiDBLite consensus disorder prediction 76 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04377 Viun-Chr3 51548023 51553457 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04377 166 539 Eukaryotic Initiation Factors Gene Family AT3G19760 34.400 1.96e-68 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04377 K12823 - gmx:100817092 969.148